Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2770 122 7e-23 seq3427 120 3e-22 seq2223 100 2e-16 >seq2770 Length=58540 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || |||||| ||||||| || || |||| || || || || | | Sbjct 45676 AATATGCAGATCTTCGTAAAAACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGC 45735 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| | |||| || || || || ||||| |||||||| || ||| Sbjct 45736 TCTGACACCATCGACAACGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCGGAT 45795 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | | || |||||||| || ||| | ||||| || ||| || |||||||| Sbjct 45796 CAGCAGAGGTTGATCTTTGCCGGGAAGCAGCTTGAGGACGGACGAACCCTCGCCGATTAC 45855 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| || ||||||||| | ||||| || Sbjct 45856 AACATTCAGAAGGAATCCACCCTTCATTTGGT 45887 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || || || ||||| || | ||||||||||| ||| | | Sbjct 46363 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAGACAATTACTCTTGAAGTTGAATCATCT 46422 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||||| || || |||||||| ||||| || ||||| Sbjct 46423 GACACGATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAGGGAATTCCCCCAGATCAG 46482 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| ||||| | ||||| ||| ||| | ||||||||||| Sbjct 46483 CAGCGTCTAATCTTTGCCGGAAAACAACTCGAGGACGGCCGTACCCTTGCCGATTACAAC 46542 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 46543 ATCCAGAAGGAGTCGAC 46559 Score = 105 bits (116), Expect = 6e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | ||||| || ||| |||| || || ||||| | | | Sbjct 46591 ATGCAGATTTTTGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGAGCTCA 46650 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| |||||||| || ||||| || || || Sbjct 46651 GACACAATCGACAACGTTAAGGCCAAGATTCAGGACAAGGAAGGAATTCC-CCGGACCAG 46709 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || ||||| ||||| |||||| | | || |||||| Sbjct 46710 CAACGTCTGATTTTCGCTGGAAAGCAGTTGGAGGACGGTCGCACCCTTGCTGACTACAAC 46769 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || || || |||| ||| | || ||| Sbjct 46770 ATTCAGAAGGAGTCGACTCTGCACTTGGTGCTGCGTTTGAGGGGTGGT 46817 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || ||||| ||||| | || ||||| | | | Sbjct 46818 ATGCAAATCTTCGTGAAGACCCTTACGGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 46877 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| ||||| ||||||||||| || || || || || || Sbjct 46878 GACACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCAGACCAG 46937 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || || || |||||| || || | | ||||||||| Sbjct 46938 CAGCGTCTCATCTTTGCGGGGAAGCAATTGGAGGATGGTCGTACTCTTGCTGATTACAAC 46997 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 46998 ATTCAGAAGGAGTCTACC 47015 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| ||||| || || || ||| |||| || || || ||| | || Sbjct 46135 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACGATCACCCTCGAGGTCGAATCTTCC 46194 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| ||| || || ||||| || || || || || || || Sbjct 46195 GACACCATCGACAACGTCAAAGCAAAGATCCAGGACAAAGAAGGGATCCCCCCGGACCAG 46254 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| || || | ||||| || || | ||||||||||| Sbjct 46255 CAGAGACTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTTGCCGATTACAAC 46314 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || ||||||||| | || || || Sbjct 46315 ATCCAGAAGGAATCCACCCTCCACTTGGT 46343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| ||| ||||||| || || |||| || || || ||| | || Sbjct 45907 ATGCAGATCTTCGTTAAGACTCTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCC 45966 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| || || || ||||| || || || || || || || Sbjct 45967 GACACCATCGACAACGTCAAAGCTAAGATCCAGGACAAAGAAGGGATCCCCCCAGACCAG 46026 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| || || | ||||| || || || ||||||||||| Sbjct 46027 CAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTCGCCGATTACAAC 46086 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 46087 ATCCAGAAGGAATCCAC 46103 >seq3427 Length=45480 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| ||||| ||||| ||||| ||||| || |||||||||| ||||| | Sbjct 42964 AGATGCAAATCTTTGTGAAAACCTTAACTGGTAAGACCATCACTCTTGAGGTGGAGAGTT 42905 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | |||||| | ||| || | || || || |||||||||||||| ||||| || |||| Sbjct 42904 CTGATACCATAGACAATGTTAAGGCTAAGATCCAAGACAAGGAGGGGATTCCCCCAGATC 42845 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||| | | || ||||| || || || || || ||| | || | | ||||||| Sbjct 42844 AACAGAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACA 42785 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | ||||| || || || ||| | || | || |||| ||| | || || Sbjct 42784 ATATTCAGAAGGAGTCAACCCTTCACCTCGTGCTGCGTTTGAGGGGTGG 42736 Score = 114 bits (126), Expect = 1e-20 Identities = 155/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || | || ||||| || |||| | | Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTAC-CTTGAGGTAGAAAGCTCG 42448 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || ||||||||||||||||| || || ||||| || || Sbjct 42447 GATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 42388 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| |||||||| || || || || ||| | | || | | ||||||||| Sbjct 42387 CAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAAC 42328 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| || || ||| | ||||| || |||| Sbjct 42327 ATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGCG 42293 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || || ||||| || || | ||| | || ||||| | | Sbjct 42051 ATGCAGATCTTTGTTAAGACCTTGACCGGAAAGACCATAACTTTGGAGGTGGAGAGTTCG 41992 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || |||||||| ||||| |||||||| ||||| || || Sbjct 41991 GATACCATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATCCCACCAGACCAG 41932 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||||| || ||| | || | | ||||||||| Sbjct 41931 CAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTAGGACTTTGGCTGATTACAAC 41872 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| || || Sbjct 41871 ATTCAGAAAGAGTCTAC 41855 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || ||||||| || || || | | Sbjct 42734 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTTGAGAGTTCT 42675 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || ||||| ||||| ||||| ||||| || || Sbjct 42674 GATACCATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAG 42615 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| |||||||| || || | |||||| | || | | ||||||||| Sbjct 42614 CAGAGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGAAGGACTTTGGCTGATTACAAC 42555 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 42554 ATTCAGAAGGAGTCCAC 42538 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || ||||| || || || ||||| | || || |||| | | Sbjct 42279 ATGCAGATCTTTGTGAAGACCTTAACTGGAAAGACCATCACTTTGGAGGTAGAAAGCTCG 42220 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || |||||||| ||||| ||||| || ||||| || || Sbjct 42219 GATACAATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCACCAGACCAG 42160 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || ||||| || || | |||||| | || | | ||||||||| Sbjct 42159 CAAAGACTTATCTTCGCCGGTAAGCAACTCGAGGATGGAAGGACACTTGCAGATTACAAC 42100 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || || || | || | || ||||| Sbjct 42099 ATCCAGAAGGAGTCTACTCTTCACCTCGTGTTGCG 42065 >seq2223 Length=74567 Score = 100 bits (110), Expect = 2e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||| || || || | || || || || || | | Sbjct 64067 ATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACTATAACCCTAGAGGTTGAGTCTTCT 64126 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||| || || ||||| || || Sbjct 64127 GACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCAT-CCACCAGACCAG 64185 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| || ||| ||||||| ||| ||| | ||||||||||| Sbjct 64186 CAACGTCTCATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGAACCCTAGCCGATTACAAC 64245 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || || || Sbjct 64246 ATCCAAAAGGAGTCGAC 64262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419671167517150