Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq356 136 8e-27 seq4711 87.8 4e-12 seq4112 87.8 4e-12 seq3641 87.8 4e-12 seq3028 87.8 4e-12 seq2643 87.8 4e-12 seq735 87.8 4e-12 seq592 87.8 4e-12 seq533 87.8 4e-12 seq4712 86.0 1e-11 seq544 86.0 1e-11 >seq356 Length=267683 Score = 136 bits (150), Expect = 8e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 ||||||||||| | ||||| || | || |||||||| | |||||| ||||| Sbjct 35936 TGGTGGATGGCTTAAAGCCTGGTCAAAGGAAAATCCTCTTCTGTTCTTTCAAGAGGAACT 35995 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | || ||||| ||||| ||||||||||||||||||||||| ||| ||| | ||||| Sbjct 35996 TTGTGAAAGAAGCAAAGGTTGCTCAGTTTTCTGGTTATGTATCTGAACATTCAGCCTACC 36055 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 | || |||||| |||||| ||| |||| | || |||||||| || ||||| || | Sbjct 36056 ACCATGGTGAGGCGAGTCTTGCTGGTACCATCATTGGAATGGCACAAGATTATGTTGGTA 36115 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 ||||||| || || | | | || || ||||||||||| Sbjct 36116 GTAACAATATCAATCTTTTACAGCCAAATGGTCAGTTTGG 36155 Score = 87.8 bits (96), Expect = 4e-12 Identities = 201/299 (67%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 218814 GGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 ||| |||||||| |||| ||| | ||||||||||| || || || || | || | Sbjct 36251 GGGAGGAAAGGACCATGCTAGTGCTCGTTATATCTTTACCAAATTATCTCCTATCACAAG 36310 Query 218874 CCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTC 218933 | ||| ||| |||||| | || ||| | || ||||| || |||||| || Sbjct 36311 AACACTTTTCCCAAAGGACGATGACATTCTTCTTGACTACCTTGATGAGGATGGTCAGTC 36370 Query 218934 GATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGG 218993 |||||||| ||||||||||| | ||||| | | || || ||||| | || Sbjct 36371 CATTGAGCCTACTTGGTATGTGCCAGTCATTCCAACTGTTCTTGTCAATGGAAGTGAAGG 36430 Query 218994 TATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAG-GACATCATTGACA 219052 ||| || ||||| | ||| || ||||||| ||| || |||||| ||||| ||| | Sbjct 36431 TATTGGAACAGGTTGGAGTTCTTACATTCCAAATTATAA-CCCAAGAGACATAGTTGCAA 36489 Query 219053 ACGTCAAGCGTCTCATATCTGGCAAGGAGATGGTACCGATGTCTCCGTGGTACA-AGGA 219110 || | | | | || ||| |||| ||||| || ||| |||| ||||||| |||| Sbjct 36490 ACATAAGGAACTTGATCAATGGTGAGGAAATGGTTCCAATGGCTCCATGGTACAGAGGA 36548 >seq4711 Length=28868 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 21184 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 21243 Query 142563 CCCCAC 142568 |||||| Sbjct 21244 CCCCAC 21249 >seq4112 Length=35488 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 27202 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 27143 Query 142563 CCCCAC 142568 |||||| Sbjct 27142 CCCCAC 27137 >seq3641 Length=41612 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 12452 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12511 Query 142563 CCCCAC 142568 |||||| Sbjct 12512 CCCCAC 12517 >seq3028 Length=52452 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5146 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5205 Query 142563 CCCCAC 142568 |||||| Sbjct 5206 CCCCAC 5211 >seq2643 Length=61607 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 39493 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 39552 Query 142563 CCCCAC 142568 |||||| Sbjct 39553 CCCCAC 39558 >seq735 Length=181087 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 58165 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 58106 Query 142563 CCCCAC 142568 |||||| Sbjct 58105 CCCCAC 58100 >seq592 Length=206781 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 133949 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 133890 Query 142563 CCCCAC 142568 |||||| Sbjct 133889 CCCCAC 133884 >seq533 Length=217702 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 77173 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 77114 Query 142563 CCCCAC 142568 |||||| Sbjct 77113 CCCCAC 77108 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 81450 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 81391 Query 142563 CCCCAC 142568 |||||| Sbjct 81390 CCCCAC 81385 >seq4712 Length=28841 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 693 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 634 Query 142564 CCCAC 142568 ||||| Sbjct 633 CCCAC 629 >seq544 Length=215698 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 22025 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22084 Query 142564 CCCAC 142568 ||||| Sbjct 22085 CCCAC 22089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027690490643510