Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2223 176 8e-39 seq3427 168 1e-36 seq2770 161 2e-34 seq4712 100 5e-16 seq4711 100 5e-16 seq4112 100 5e-16 seq3641 100 5e-16 seq3028 100 5e-16 seq2643 100 5e-16 seq735 100 5e-16 seq592 100 5e-16 seq544 100 5e-16 seq533 100 5e-16 seq753 93.3 8e-14 seq8279 87.8 3e-12 seq6102 87.8 3e-12 >seq2223 Length=74567 Score = 176 bits (194), Expect = 8e-39 Identities = 177/229 (77%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | ||| | | |||||||| || || ||||| ||||||||||| ||||||| Sbjct 64293 TCCTCCTCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGC 64234 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || || |||| |||||| |||||||| ||||| | ||| ||||| ||||| Sbjct 64233 TAGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG 64174 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||||||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 64173 -ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAAC 64115 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| || || || || || ||||| || ||||| ||||||||| Sbjct 64114 CTCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATT 64066 >seq3427 Length=45480 Score = 168 bits (186), Expect = 1e-36 Identities = 169/218 (78%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| ||||| || || || ||||| ||||||||||| ||||| | | ||||| Sbjct 42290 AGACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCTAAAGTCCTG 42349 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| || ||||| ||||| || || |||||||| ||||| ||||| || |||||| Sbjct 42350 CCATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCC 42409 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||||||||| || ||||| || || || || || | |||||| | |||||| Sbjct 42410 TTGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCT-CAAGGTA 42468 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || |||||||| || ||||| ||||| Sbjct 42469 ATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| || | ||| || || ||||| || || || || ||||| | | ||||| ||| Sbjct 42748 CGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCA 42807 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || |||||||| || || || | || ||||| || || ||||| || |||||| Sbjct 42808 TCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGGGAATCCCCTCCTTG 42867 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| ||||| ||||| || || ||||| || | || || || | |||||| Sbjct 42868 TCTTGGATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCCACCTCAAGAGTGATG 42927 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | ||| || || || || ||||| Sbjct 42928 GTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 >seq2770 Length=58540 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || |||||||| ||||||| || || | || || || Sbjct 46343 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGTCCTCA 46284 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || Sbjct 46283 AGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCCTGG 46224 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||| |||||| ||||||||||| | ||||| || || | |||||| || ||| Sbjct 46223 ATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTT 46164 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||| ||||| |||||||| Sbjct 46163 CCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 156 bits (172), Expect = 8e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || |||||||| ||||||| ||| || | || || || Sbjct 46115 ACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGTCCGTCCTCA 46056 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| |||||||| || || || || ||||| || || || ||||| ||||| || Sbjct 46055 AGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCCTGG 45996 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| || |||||| ||||||||||| | ||||| || || | |||||| || || Sbjct 45995 ATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATAGTCTTC 45936 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| ||||| |||||||| Sbjct 45935 CCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 150 bits (166), Expect = 3e-31 Identities = 163/215 (76%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| |||||||| || || ||||| || || ||||| || || | || || | || Sbjct 46804 CGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCG 46745 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || |||||||| || ||||| || || | ||| ||||| || ||||| ||||||||| Sbjct 46744 TCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GGAATTCCTTCCTTG 46686 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || |||||||| ||||| ||| ||||| ||||||| || || || | |||||| Sbjct 46685 TCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATC 46626 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || |||||||||||||| || |||||||| Sbjct 46625 GTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || || ||||| ||||| | Sbjct 47044 CCACCACGAAGACGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 46985 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || || |||||||| || || ||||| | || ||||| || || Sbjct 46984 AGAGTACGACCATCCTCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGG 46925 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| || || |||||||| || || ||||| | || || Sbjct 46924 ATGCCTTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACC 46865 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||||||||| ||||| |||||||| ||||| || ||||| Sbjct 46864 TCCAAAGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || ||||| || || || ||||| ||||||| ||| || | || || || Sbjct 45887 ACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCCTCA 45828 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||||||||| || || | || || || || || ||||| |||||||| || || Sbjct 45827 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCCTGG 45768 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| ||||||||||| | || || || | ||||||||| || Sbjct 45767 ATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTG 45708 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || ||||| |||||||| Sbjct 45707 CCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 >seq4712 Length=28841 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 693 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 634 Query 84516 CCCAC 84520 ||||| Sbjct 633 CCCAC 629 >seq4711 Length=28868 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 21185 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21244 Query 84516 CCCAC 84520 ||||| Sbjct 21245 CCCAC 21249 >seq4112 Length=35488 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 27201 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 27142 Query 84516 CCCAC 84520 ||||| Sbjct 27141 CCCAC 27137 >seq3641 Length=41612 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 12453 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12512 Query 84516 CCCAC 84520 ||||| Sbjct 12513 CCCAC 12517 >seq3028 Length=52452 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 5147 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5206 Query 84516 CCCAC 84520 ||||| Sbjct 5207 CCCAC 5211 >seq2643 Length=61607 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 39494 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 39553 Query 84516 CCCAC 84520 ||||| Sbjct 39554 CCCAC 39558 >seq735 Length=181087 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 58164 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 58105 Query 84516 CCCAC 84520 ||||| Sbjct 58104 CCCAC 58100 >seq592 Length=206781 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 133948 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 133889 Query 84516 CCCAC 84520 ||||| Sbjct 133888 CCCAC 133884 >seq544 Length=215698 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 22025 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22084 Query 84516 CCCAC 84520 ||||| Sbjct 22085 CCCAC 22089 >seq533 Length=217702 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 77172 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 77113 Query 84516 CCCAC 84520 ||||| Sbjct 77112 CCCAC 77108 Score = 100 bits (110), Expect = 5e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 81449 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 81390 Query 84516 CCCAC 84520 ||||| Sbjct 81389 CCCAC 81385 >seq753 Length=178373 Score = 93.3 bits (102), Expect = 8e-14 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 ||||||||||| |||||||| |||||||| ||||||||||| ||| || || || || Sbjct 81307 CCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATGGTGTC-GCTAGACTCGACCTC 81249 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || || ||||| || ||||| |||||||| Sbjct 81248 AAGGGTGATGGTCTTCCCAGTTAGGGTTTTCACGAAGATCTGCAT 81204 >seq8279 Length=9783 Score = 87.8 bits (96), Expect = 3e-12 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGC-AGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1384 GCCCGTCTAGCTCAGTTGGTTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1443 Query 84515 CCC 84517 ||| Sbjct 1444 CCC 1446 >seq6102 Length=18543 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 ||||||||||| |||||||| |||||||| |||||||| || ||| || || || || Sbjct 17131 CCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATGGTATC-GCTAGACTCGACCTC 17073 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || || ||||| || ||||| |||||||| Sbjct 17072 AAGGGTGATGGTCTTCCCAGTTAGGGTTTTCACGAAGATCTGCAT 17028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921494409689200