Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3427 93.3 3e-14 >seq3427 Length=45480 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || ||||| || || ||||| || |||| ||| | | Sbjct 42279 ATGCAGATCTTTGTGAAGACCTTAACTGGAAAGACCATCACTTTGGAGGTAGAAAGCTCG 42220 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| || |||||||| | || | |||| Sbjct 42219 GATACAATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCACCAGACCAG 42160 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||||||||| || || || ||||| || ||| || || | || |||||||| Sbjct 42159 CAAAGACTTATCTTCGCCGGTAAGCAACTCGAGGATGGAAGGACACTTGCAGATTACAAC 42100 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGT 22049 || |||||||| ||||||||||| | || || ||| Sbjct 42099 ATCCAGAAGGAGTCTACTCTTCACCTCGTGTTGCGT 42064 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| || ||| | || | |||| ||||||||||||||||| || || ||||| || Sbjct 42641 GATAAGGAAGGTATCCCACCAGACCAGCAGAGACTTATCTTTGCCGGTAAGCAACTCGAG 42582 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || ||| |||| |||||||| ||||||||||| || || |||||| | || | Sbjct 42581 GATGGAAGGACTTTGGCTGATTACAACATTCAGAAGGAGTCCACACTTCATCTCGTGCTT 42522 Query 22047 CGTTTACGAGGAGG 22060 ||| | || || || Sbjct 42521 CGTCTTCGTGGCGG 42508 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || || || || || ||||| || |||| ||| | Sbjct 42051 ATGCAGATCTTTGTTAAGACCTTGACCGGAAAGACCATAACTTTGGAGGTGGAGAGTTCG 41992 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| || ||||||||| | || | |||| Sbjct 41991 GATACCATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATCCCACCAGACCAG 41932 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| ||||| | |||||| | ||| |||| |||||||| Sbjct 41931 CAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTAGGACTTTGGCTGATTACAAC 41872 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| || ||||||||||| Sbjct 41871 ATTCAGAAAGAGTCTACTCTTCA 41849 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||| || || ||||| || | || ||| | Sbjct 42962 ATGCAAATCTTTGTGAAAACCTTAACTGGTAAGACCATCACTCTTGAGGTGGAGAGTTCT 42903 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || || || || ||||| | || | | ||| Sbjct 42902 GATACCATAGACAATGTTAAGGCTAAGATCCAAGACAAGGAGGGGATTCCCCCAGATCAA 42843 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| || ||| | |||||| || ||| |||| ||||||||| Sbjct 42842 CAGAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 42783 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||| || || ||||| Sbjct 42782 ATTCAGAAGGAGTCAACCCTTCA 42760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358076308782940