Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2770 131 1e-25 seq3427 87.8 2e-12 >seq2770 Length=58540 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || || | || || || | || ||||| || || |||||||||||| Sbjct 46364 ATACCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCG 46305 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || |||||||| || || ||| |||| || | ||| |||||||| Sbjct 46304 GCAAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGG 46245 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| |||||| ||| | | || | |||||||| |||||| Sbjct 46244 GGGATCCCTTCTTTGTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCG 46185 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||| || || |||| ||| || || || |||||||| Sbjct 46184 ACCTCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || || | || || || | || ||||| || || |||||||||||| Sbjct 46136 ATACCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCG 46077 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || |||||||| || || ||| |||| || | ||| ||||| || Sbjct 46076 GCGAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGG 46017 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| ||| | | || | |||||||| |||||| Sbjct 46016 GGGATCCCTTCTTTGTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCG 45957 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || ||||| ||||| || || || ||||||||| Sbjct 45956 ACCTCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCATG 45906 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | || ||||| | || ||||| || ||||||||||||||| Sbjct 45908 ATGCCACCACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCG 45849 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || || || |||| | | ||| || ||||| Sbjct 45848 GCGAGGGTTCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGG 45789 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||| || | | || | |||||| | | ||| Sbjct 45788 GGAATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCG 45729 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| ||||||||||| || |||||||| Sbjct 45728 ACCTCGAGGGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || |||||||||||||| | ||||||| ||| || | ||| || || Sbjct 47014 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTCCAATTGCTTCCCC 46955 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| ||||| ||||| |||||||| ||||| || || || Sbjct 46954 GCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCCTTG 46895 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || |||| || | |||||||| || || || Sbjct 46894 ACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGGTC 46835 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 46834 TTCACGAAGATTTGCAT 46818 >seq3427 Length=45480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | ||| | || | ||||| ||||| |||||||||||||| | Sbjct 41825 CCGCCACGAAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCC 41884 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| | | |||||| | ||||||||||| | || | | ||| ||||| || || Sbjct 41885 AAAGTCCTACCATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 41944 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || |||||||| ||| || |||| | || | ||| || | || || Sbjct 41945 ATACCCTCTTTGTCCTGAATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACC 42004 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| || | || || ||||||| || || ||||| ||||||||| Sbjct 42005 TCCAAAGTTATGGTCTTTCCGGTCAAGGTCTTAACAAAGATCTGCATG 42052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420077512489320