Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3427 86.0 5e-12 seq2770 82.4 6e-11 >seq3427 Length=45480 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| |||| ||| || ||||| || ||||||||| ||||||||||||| | Sbjct 42053 CCACCCCTCAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTG-C 42111 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || |||| | | || || | |||||| ||||| || || || | ||||| || || Sbjct 42112 AAGTGTCCTTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGG 42171 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || |||||||||| |||||| Sbjct 42172 GATGCCCTCTTTGTCCTGAATTTT 42195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| |||||||| ||| ||||||||||||||||||||| ||||| ||| Sbjct 42517 AGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAA-AGTCCT 42575 Query 33970 T-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || | |||||| |||||||| || || | |||||| || Sbjct 42576 TCCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTC 42620 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| |||||||| || ||||| || |||||||||||| |||||||| ||| Sbjct 42736 CCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCC 42795 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || ||||||||||| || ||||| |||| | ||| ||||| || Sbjct 42796 AA-AGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGGG 42854 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTA--ATGGAACTCACACTATCAGTAGATTCG 34077 | | ||| ||||| || || |||| || | || | |||||| | || Sbjct 42855 AATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTG-TCT-ATGGTATCAGAACTCTCC 42912 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || |||| |||||||||||||||||||| Sbjct 42913 ACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 >seq2770 Length=58540 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||||| |||||| ||| |||||||||||||||||||| || | ||| Sbjct 45896 AGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGT 45837 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| || | ||||| |||||||| |||| | |||||||||| Sbjct 45836 CCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCC 45792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397008636510220