Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2770 168 2e-36 seq3427 86.0 1e-11 >seq2770 Length=58540 Score = 168 bits (186), Expect = 2e-36 Identities = 176/230 (77%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || | || | ||| ||| || ||||| || || |||||| Sbjct 46133 CCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCG 46074 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || | ||| ||||| ||||||||||| | ||| || |||||| Sbjct 46073 AGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGG---TCTGGG 46017 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| |||||||| || ||||| ||||| || || | ||| ||||| Sbjct 46016 GGGATCCCTTCTTTGTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCG 45957 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 45956 ACCTCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || | || | ||| ||| || ||||| || || ||||| Sbjct 46361 CCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCA 46302 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || | ||| ||||| ||||||||||| | ||| || ||| Sbjct 46301 AGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGG 46242 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| |||||||| || ||||| ||||| || || | ||| ||||| || Sbjct 46241 ATCCCTTCTTTGTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACC 46182 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| || |||| |||||| ||||| |||||||| Sbjct 46181 TCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 131 bits (144), Expect = 4e-25 Identities = 174/238 (73%), Gaps = 13/238 (5%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| || || || | ||||| ||| ||| || || || || || | Sbjct 45909 CATG-CCACCACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAAT 45851 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||||||| || |||||||| || | || || || || ||||||| | ||| ||| | Sbjct 45850 CGGCGAGGGTTCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGA---T 45794 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GC 288415 | ||| || ||||| ||||||||||| || || || ||||| || || | || || Sbjct 45793 CCGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGC 45734 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct 45733 TC---TCGACCTCGAGGGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||||| || || || ||||| || | ||||||||| || ||| Sbjct 46553 TCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCAAAG 46494 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| ||| |||||| ||||| || |||||||||||||| || || ||| Sbjct 46493 ATTAGACGCTGCTGA---TCTGGGGGAATTCCCTCCTTATCCTGGATTTTGGCCTTGACG 46437 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || ||||| ||||| || || || ||||| || |||| ||||| Sbjct 46436 TTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCTTACCAGTCAAGGTCTTA 46377 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 46376 ACAAAGATCTGCAT 46363 Score = 125 bits (138), Expect = 2e-23 Identities = 147/196 (75%), Gaps = 11/196 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || || ||||| ||||| || || || ||||| ||||| Sbjct 46780 TCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAA 46721 Query 288343 ATCAGACGCTGTTGAGAATCTGGG--ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 |||||||| || || || ||| |||||||| || ||||| || || || || |||| Sbjct 46720 ATCAGACGTTGCTGG---TCCGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGT 46664 Query 288401 TTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 | || || | || |||| || || ||||| ||||||||||||||||| || |||| Sbjct 46663 TGTCGATTGTGTCTGAGCTC---TCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCT 46607 Query 288458 TGACGAATATCTGCAT 288473 |||| || |||||||| Sbjct 46606 TGACAAAAATCTGCAT 46591 >seq3427 Length=45480 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || || || || | || | || ||||| ||||| || || || ||| Sbjct 42317 TCCTTTTGGATGTTGTAATCAGCTAAAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAG 42376 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | || || |||||||||||| || || || |||||||| || || || Sbjct 42377 ATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTCGCCTTTACATTG 42436 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| |||||| || || || || ||||| || || || ||||| Sbjct 42437 TCAATTGTATCCGAGCT---TTCTACCTCAAG-GTAATGGTCTTTCCTGTAAGGGTCTTC 42492 Query 288460 ACGAATATCTGCAT 288473 || ||||| ||||| Sbjct 42493 ACAAATATTTGCAT 42506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179486479882580