Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1439 113 5e-20 >seq1439 Length=111383 Score = 113 bits (124), Expect = 5e-20 Identities = 249/371 (67%), Gaps = 2/371 (1%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||| ||||| || || || ||||| || || | ||||||||| | Sbjct 101129 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 101188 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | ||| || | | || | || || || ||||||||||| || || || || || Sbjct 101189 TCCAAGACCAGCCCCTCTCTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA 101248 Query 10996 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || || |||| || ||| ||||| | ||| |||||||| ||||| || |||| Sbjct 101249 -GGGTGCTTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCTGGACGCACCAACTCCCA 101307 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 |||||| ||||||||| | | || | |||| || || || ||| || ||||| | Sbjct 101308 CAAACAATTCCACAAACTCTGAAGCTGCACATGAGAAAAACGGCACGCCGGCCTCACCAG 101367 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCAC 11174 | | ||||| || | |||||||| || || |||||| || | ||||| || Sbjct 101368 CCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGGTGGTCCAACAAGAAGACACCCTT 101427 Query 11175 GTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTT 11234 ||||||| | || ||| | || ||| || || | || | ||| || || | || Sbjct 101428 TTGGGATCTTAGCTCCAAGTGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACCACTT 101487 Query 11235 CTTCCAATTCA 11245 ||| || |||| Sbjct 101488 CTTGCAGTTCA 101498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597270642518800