Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2770 114 1e-20 seq2223 102 9e-17 seq3427 96.9 4e-15 >seq2770 Length=58540 Score = 114 bits (126), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| ||||| || | || || | ||||| || || || Sbjct 47009 CTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTCCAATTGCTTCCCCGCAAA 46950 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||| |||||| |||| | Sbjct 46949 GATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCCTTGACATT 46890 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| ||||| || | ||||||||||||||||| || ||||| Sbjct 46889 GTCAATTGTGTCAGAGCTC---TCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTT 46833 Query 42194 TACAAAGATTTGCAT 42208 || ||||||||||| Sbjct 46832 CACGAAGATTTGCAT 46818 >seq2223 Length=74567 Score = 102 bits (112), Expect = 9e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | | | |||||| || | || ||||||||| || |||||||| || Sbjct 64292 CCTCCTCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCT 64233 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| ||||||||||| || ||||| ||||| || |||||||| | ||| Sbjct 64232 AGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG- 64174 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| ||| || |||| | | | ||||| || || || Sbjct 64173 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACC 64114 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || || || || || ||||| || || || ||||| |||||| Sbjct 64113 TCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATT 64066 >seq3427 Length=45480 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||| | |||| |||||| ||||| ||||||||||||| ||||| | Sbjct 42519 ACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCC 42578 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || |||||||| || || || |||| ||||||||| | ||| | | ||||| Sbjct 42579 ATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTCCTT 42638 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 || ||| || |||| | | | || || ||| || || |||| || Sbjct 42639 ATCTTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTC---TCAACCTCGAGAGT 42695 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||| || || || || ||||| ||||| ||||||||| Sbjct 42696 GATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATT 42735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543137361322400