Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2770 132 5e-26 seq2223 109 5e-19 seq3427 107 2e-18 >seq2770 Length=58540 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| | ||||| || ||||| || |||||||||||||| |||| ||| || || Sbjct 45893 CTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCG 45834 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || ||||||||||| |||||| | || | || |||||| || || ||||| ||||| || Sbjct 45833 TCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTA 45774 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| || || | || ||| | || || || | || | | Sbjct 45773 TCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATG 45714 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||||||| | |||||||||||| || ||||| || Sbjct 45713 GTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCATATT 45676 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || |||||||||||||| || | || || | || Sbjct 47030 AAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATC 46971 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | ||||| || ||| | ||||| ||||||||||| ||||| || ||||| || || Sbjct 46970 CTCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTC 46911 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| ||| || | ||| ||| | ||||| || | ||| | ||| Sbjct 46910 TTGGATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGT 46851 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || ||||| |||||||| Sbjct 46850 TTTGCCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | || | ||||| || || || ||||||||||| || | ||| || |||| Sbjct 46575 AAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTC 46516 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || || || |||||| | || || |||||||| || || |||||||| || || || Sbjct 46515 CTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATC 46456 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||| || || | || ||| | || ||||| | ||| | || Sbjct 46455 CTGGATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGT 46396 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || ||||| || || || || || ||||| Sbjct 46395 CTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | ||||| | || | ||||| || || ||||||||||| || || Sbjct 46817 ACCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGC 46758 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || | |||||| || || |||| || || |||||||| || || Sbjct 46757 AAGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GG 46699 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||| || || | ||| || | ||||| Sbjct 46698 AATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCAC 46639 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||| | || || || ||||| ||||| Sbjct 46638 CTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| | || | || ||||| || || ||||||||||| || Sbjct 46134 ACCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGC 46075 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || |||| ||||| ||||| ||||| | || |||| ||||||||| || || Sbjct 46074 GAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGG 46015 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || |||||||| || || | | || ||||| || || | || || | || | Sbjct 46014 GATCCCTTCTTTGTCCTGGA-TCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGA 45956 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| ||||| | ||| || ||||| || ||||| Sbjct 45955 CCTCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| | || | || ||||| || || ||||||||||| || Sbjct 46362 ACCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 46303 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| ||||| ||||| ||||| | || || | ||||||||| || || Sbjct 46302 AAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGG 46243 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || |||||||| || || | | |||||||| || || | || || | || | Sbjct 46242 GATCCCTTCTTTGTCCTGGA-TCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGA 46184 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| || |||||||| || ||||| || ||||| Sbjct 46183 CCTCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 >seq2223 Length=74567 Score = 109 bits (120), Expect = 5e-19 Identities = 155/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| ||||| | |||| ||||| || ||||| ||||||||||| || | ||| || | Sbjct 64281 TCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCC 64222 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| || |||||||| ||||| | ||||| || |||||||| || || || ||||| || Sbjct 64221 GTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCCTT 64163 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||| ||| || | || ||| | || || |||| |||| Sbjct 64162 GTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTAT 64103 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || || | ||||| ||||| || |||||| Sbjct 64102 AGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATT 64066 >seq3427 Length=45480 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || ||||| |||||||||||||| || | || | | ||| Sbjct 41840 AGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCT 41899 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||| || || ||| |||| | || ||||||||| || || || || ||||| || Sbjct 41900 TCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCC 41959 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||||||| || | ||||| ||||| || | ||||| |||| Sbjct 41960 TGAATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTC 42019 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| || || || || || ||||| Sbjct 42020 TTTCCGGTCAAGGTCTTAACAAAGATCTGCAT 42051 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | |||||| ||||||| || || || || |||||||||||||| || Sbjct 42507 ACCGCCACGAAGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGC 42566 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | || || || ||||| |||||| | || || | ||||||||| || || Sbjct 42567 CAAAGTCCTTCCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGG 42626 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| || || ||| ||| || | |||||| || || Sbjct 42627 GATACCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAAC 42686 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | |||||| || || | || || || || ||||||||| Sbjct 42687 CTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATT 42735 Score = 100 bits (110), Expect = 3e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||||| ||||| || ||||| ||||||||||| || | || | | ||| Sbjct 42296 AGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCTAAAGTCCTGCCATCT 42355 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| |||||| | || || | |||||||| || || |||||||| || ||| Sbjct 42356 TCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 42415 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||||||| || | |||||| | || || || | || | |||| Sbjct 42416 TGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCTC-AAGGTAATGGTC 42474 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || || || |||||||| Sbjct 42475 TTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || |||| || || || || || |||||||||||||| | || | | || || Sbjct 42070 CACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGTGTCCTTCCATCCTC 42129 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || ||||| ||||| | || || | |||||||| || || || || ||||| || || Sbjct 42130 GAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTG 42189 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 ||||| ||||||| || | |||||| | || || || | ||| | |||||| Sbjct 42190 AATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACCTCCAAAGTGATGGTCTT 42249 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || || || || || || ||||| Sbjct 42250 TCCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499575411828400