Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2770 116 4e-21 seq3427 84.2 2e-11 seq2223 84.2 2e-11 >seq2770 Length=58540 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||| ||| | |||||| |||||| ||||| || |||| Sbjct 46328 GATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCG 46269 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || ||||||||||| ||| ||| ||| | Sbjct 46268 AAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCCTGGATCTTTGCTTTGACG 46209 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| || || ||||||| || | ||| || ||||||| ||| || Sbjct 46208 TTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTA 46149 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 46148 ACGAAGATCTGCAT 46135 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||| ||| | |||||| |||||| ||||| || |||| Sbjct 46100 GATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCG 46041 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||||||||| ||| || ||| | Sbjct 46040 AAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCCTGGATCTTAGCTTTGACG 45981 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| || || ||||||| || | || || || || ||||| || Sbjct 45980 TTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTA 45921 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 45920 ACGAAGATCTGCATG 45906 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||| | ||||| ||||||||||||||| |||| | Sbjct 46556 GACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCA 46497 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 ||||||||||||| || || || || || || || || || |||||| || | Sbjct 46496 AAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGGATTTTGGCCTTGACG 46437 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | || || || || | || | || |||||||||| || || Sbjct 46436 TTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCTTACCAGTCAAGGTCTTA 46377 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 46376 ACAAAGATCTGCAT 46363 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||||| || || || | | |||||||| |||||||||||||| Sbjct 46816 CCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCA 46757 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| | || || || | | || ||||| || |||||||| || Sbjct 46756 AGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GGA 46698 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | |||| |||| | | ||||| | ||||| Sbjct 46697 ATTCCTTCCTTGTCC-TGAATCTTGGCCTTAACGTTGT-CGATTGTGTCTGAGCTCTCCA 46640 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||| || | ||| || || || || || || ||||||||||||||| || Sbjct 46639 CCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATGCCT 46587 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | || | | | |||||||| ||||||||||| || Sbjct 47044 CCACCACGAAGACGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 46985 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| | ||| || || | | |||| |||||||| ||||| ||||| Sbjct 46984 AGAGTACGACCATCCTCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGG 46925 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || | |||| || | ||||| | |||||| Sbjct 46924 ATGCCTTCCTTGTCTTGGATTTTAGCCTTGACATTG-TCAATTGTGTCAGAGCTCTCCAC 46866 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || || || || || || || ||||| Sbjct 46865 CTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | | || ||||| ||||||||||| ||| | || || |||||| Sbjct 45887 ACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCCTCA 45828 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 || || || |||| | |||| | | ||| || ||||| || |||||||| || || | Sbjct 45827 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCCTGG 45768 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || || || | | || | |||||| | ||| ||||||| || | || || Sbjct 45767 ATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTG 45708 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||||||||| || |||||||| Sbjct 45707 CCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 >seq3427 Length=45480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | |||||||| ||||||||||| || | Sbjct 42508 CCGCCACGAAGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCC 42567 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||||||||| ||||||| | |||| || | ||| ||||| || || Sbjct 42568 AAAGTCCTTCCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGG 42627 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| || || | |||| || | ||| || | ||| || Sbjct 42628 ATACCTTCCTTATCTTGGATCTTAGCCTTGACATTG-TCAATGGTATCAGAACTCTCAAC 42686 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || || || || || ||||| || ||||| Sbjct 42687 CTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42734 >seq2223 Length=74567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| ||| | || || |||||| || || || |||| Sbjct 64259 GACTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCG 64200 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||| || ||||| || || || ||||| ||||| ||| || || | | Sbjct 64199 AAGATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACA 64141 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||| | || | || || || || || ||||| Sbjct 64140 TTG-TCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGGGTTTT 64082 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 64081 CACGAAGATCTGCAT 64067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496193481559200