Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3427 122 6e-23 seq2770 89.7 4e-13 >seq3427 Length=45480 Score = 122 bits (134), Expect = 6e-23 Identities = 156/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||||||||| || || ||||| ||||||||||| ||| | | | || | ||||| Sbjct 42299 ACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCT-AAAGTCCTGCCATCTTC 42357 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||||| || || || | || | | || ||||| ||| |||||||||||||| Sbjct 42358 CAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 42417 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| |||||| | || || ||||| ||||||| || ||||||||||| || Sbjct 42418 AATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCTC-AAGGTAATGGTCTT 42476 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || ||||| ||||||||| Sbjct 42477 TCCTGTAAGGGTCTTCACAAATATTTGCATA 42507 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| ||||| || ||||||||||| | | | || | ||||| || ||| Sbjct 41849 TGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGT 41908 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| | ||| ||||| ||| || || || ||||| |||||| Sbjct 41909 TTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTTTC 41968 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||||| | ||||| ||||| | | || || || || || ||||| || || ||| Sbjct 41969 GCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGTC 42028 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || ||||| Sbjct 42029 AAGGTCTTAACAAAGATCTGCAT 42051 >seq2770 Length=58540 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | |||| || ||||||||||| || || || || |||||||||||| Sbjct 45907 TGCCACCACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGG 45848 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| |||| || | || || || || | ||||| | ||| || || | Sbjct 45847 CGAGGGTTCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGG 45788 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| |||||||| || || || || || | || || || || | || | Sbjct 45787 GAATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGA 45728 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | ||| ||||| || || || ||||||||||| || || |||||||| Sbjct 45727 CCTCGAGGGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCATATT 45676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357343608006350