Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2770 134 1e-26 seq3427 114 1e-20 >seq2770 Length=58540 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | || || || || ||||| ||||||||| | | || || || || Sbjct 45888 CACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCCTC 45829 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || || ||||||| | ||||||||| || || || || ||||| ||| Sbjct 45828 AAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCCTG 45769 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||||| ||||| ||| |||||| | |||||||| |||| ||| | || | Sbjct 45768 GATCTTAGCCTTGACGTTGT-CGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCT 45710 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| ||||||||||| || |||||||| Sbjct 45709 TGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Score = 120 bits (132), Expect = 3e-22 Identities = 168/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || |||| |||||| || | || ||||| || ||||| ||||| || | Sbjct 46816 CCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCA 46757 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || | ||| ||||||||| | |||| || ||||| || || || Sbjct 46756 AGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GGA 46698 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| || || ||| | ||||| ||| ||||| | ||||| || Sbjct 46697 ATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGT-CGATTGTGTCTGAGCTCTCCAC 46639 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 |||| ||| | ||| || ||||| || || || ||||||||||||||| || Sbjct 46638 CTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATGCCT 46587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || || || ||||||||| | | || || || || Sbjct 46572 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTC 46513 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || |||||||| || |||| | ||||||||||| || || || |||||||| ||| Sbjct 46512 GAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 46453 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 |||||| ||||| |||| |||| ||||| | || ||||| | || | || | Sbjct 46452 GATTTTGGCCTTGACGTTG-TCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCT 46394 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || |||| || || ||||| |||||||| Sbjct 46393 TACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 >seq3427 Length=45480 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| ||||| |||||||| ||| || | | ||| || | |||||| ||| Sbjct 41855 GTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGTTTACCA 41914 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | ||||| | |||||| || || || || ||||| |||||| |||||| ||| Sbjct 41915 GCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTTTCGCCTTT 41974 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| |||| |||||| || || | || | || || ||||||| || Sbjct 41975 ACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGTCAAGGTC 42034 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 42035 TTAACAAAGATCTGCATG 42052 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || |||| ||| | || | || ||||| || |||||||||||||| | Sbjct 42735 TCCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGC 42794 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || | ||| || | || || ||||| | ||||| | ||| ||||| || || Sbjct 42795 CAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGGG 42854 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| || ||| | | || | ||| || | |||||| || Sbjct 42855 AATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCCAC 42914 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || | ||||| ||||| || ||||| Sbjct 42915 CTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475434764826400