Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2770 116 3e-21 seq2223 87.8 2e-12 >seq2770 Length=58540 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| | ||| || || |||||||| || || || |||||| Sbjct 45908 ATGCCACCACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCG 45849 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| || || | || || || || | ||||| | ||||| ||||| Sbjct 45848 GCGAGGGTTCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGG 45789 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||| || || || |||| || | || | |||||| || ||| Sbjct 45788 GGAATACCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGAGCTCTC 45730 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || |||||||||||||||||||| || || ||||| Sbjct 45729 GACCTCGAGGGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| | || || || |||||||| ||||| || |||||| Sbjct 46136 ATACCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCG 46077 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || || | ||| ||||| ||| | |||| | |||||||| || Sbjct 46076 GCGAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGG 46017 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || |||||||| || || || || ||||| || | || | |||||||||||| || Sbjct 46016 GGGATCCCTTCTTTGTCCTGGATCTTAGCTTTGA-CGTTGTCGATGGTGTCGGAAGATTC 45958 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || || ||||||||||| || || || || ||||| Sbjct 45957 GACCTCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| | || || || |||||||| ||||| || |||||| Sbjct 46364 ATACCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCG 46305 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | ||| ||||| ||| | |||| || ||||||||||| Sbjct 46304 GCAAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGG 46245 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || |||||||| || || || ||| ||||| || | || | |||||||||||| || Sbjct 46244 GGGATCCCTTCTTTGTCCTGGATCTTTGCTTTGA-CGTTGTCGATGGTGTCGGAAGATTC 46186 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | ||| || || || | ||| || || || || ||||| Sbjct 46185 GACCTCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || || ||||| || || || || || | ||| | || ||||| || Sbjct 46792 TGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCGTCCTCCAACTGC 46733 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | |||| |||||||||||||| ||||| ||||| || || |||| | || Sbjct 46732 TTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GGAATTCCTTCCTTGTCCTGAA-TCTT 46675 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | | | || | || | ||||| || ||| || ||||| || | ||| || ||||| Sbjct 46674 GGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATCGTCTTCCCGGT 46615 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||| ||||| Sbjct 46614 GAGGGTCTTGACAAAAATCTGCAT 46591 >seq2223 Length=74567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| | || || | ||| | || || || || ||||||||||| || |||||| Sbjct 64293 TCCTCCTCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGC 64234 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | |||| || || | || ||||| ||| | || | ||||||||||| || || Sbjct 64233 TAGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG 64174 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || || || || |||| || | |||||| |||||||| || Sbjct 64173 -ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAAC 64115 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || ||||| ||||| || || || ||||| Sbjct 64114 CTCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 64067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451940428055600