Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1439 100 3e-16 >seq1439 Length=111383 Score = 100 bits (110), Expect = 3e-16 Identities = 248/371 (67%), Gaps = 4/371 (1%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| ||||| || || || ||||| || || | ||||||||| | Sbjct 101130 AACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACCT 101189 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| || | | || | || || || |||||||| || || || || || || Sbjct 101190 CCAAGACCAGCCCCTCTCTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA- 101248 Query 12912 GGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 || || |||| || ||| ||||| | ||| || ||||| ||||| || ||||| Sbjct 101249 GGGTGCTTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCTGGACGCACCAACTCCCAC 101308 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||||| |||||||| | | || | |||| || || || ||| || ||||| || Sbjct 101309 AAACAATTCCACAAACTCTGAAGCTGCACATGAGAAAAACGGCACGCCGGCCTCACCAGC 101368 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACG 13090 | ||||| || | |||||||| || || || ||| || | ||||| || Sbjct 101369 CACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGGTGGTCCAACAAGAAGACACCCTTT 101428 Query 13091 TGGGATCCTGGCACCACTTCCAAAGTAGCGCTC-GGGTTGTTTAAGAAAGTCCACGATTT 13149 ||||||| | || ||| | || ||| || ||||| || |||||| || || | || Sbjct 101429 TGGGATCTTAGCTCCAAGTGCAGTGTACTTATCTGGGTTCTTCAAGAAA-TCAACCACTT 101487 Query 13150 CTTCCAATTCA 13160 ||| || |||| Sbjct 101488 CTTGCAGTTCA 101498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613421999187600