Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2770 145 2e-29 seq2223 131 4e-25 seq3427 123 6e-23 seq6102 87.8 4e-12 seq753 87.8 4e-12 >seq2770 Length=58540 Score = 145 bits (160), Expect = 2e-29 Identities = 159/210 (76%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| |||||||||||||| || | |||||||||||| | || | || || Sbjct 46802 CAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCGTC 46743 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||| ||||||||| ||||| || ||||| ||||||||||| ||||||||| || Sbjct 46742 CTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GGAATTCCTTCCTTGTC 46684 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||||||| ||| ||| |||| ||||||| | || || || | |||||||| Sbjct 46683 CTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATCGT 46624 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || |||||||| || Sbjct 46623 CTTCCCGGTGAGGGTCTTGACAAAAATCTG 46594 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || || || || | |||||| || || ||||| |||| |||||| || || | ||| Sbjct 46355 CGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTA 46296 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || || ||||||||||||||||| || | |||||||||||| || ||| Sbjct 46295 CGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCT 46236 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| |||||| || ||| |||| |||||| | | ||| || || | Sbjct 46235 TCTTTGTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGG 46176 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | ||| || || || || || Sbjct 46175 GTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTG 46138 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||||||||| || |||||||| || | |||||| ||||| | ||| Sbjct 47038 CGAAGACGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTA 46979 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| ||||| || || |||||||||||||||||||| ||| || ||| Sbjct 46978 CGACCATCCTCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCT 46919 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||| || || | ||||| | | || || ||||| Sbjct 46918 TCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAA 46859 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || ||||| || ||||| Sbjct 46858 GTGATGGTTTTGCCCGTAAGGGTCTTCACGAAGATTTG 46821 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || || || || | |||||| || || ||||| |||| |||||| || || | ||| Sbjct 46127 CGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGAGTA 46068 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || || ||||||||||||||||| || | ||||||||| || || ||| Sbjct 46067 CGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCT 46008 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| || ||| |||| |||||| | | ||| || || | Sbjct 46007 TCTTTGTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGG 45948 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || || || || Sbjct 45947 GTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTG 45910 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||||||||||||||| |||| |||||| || || | || | || || Sbjct 46574 AGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCC 46515 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || |||||||| ||||| ||||||||||| || || |||||| || ||| Sbjct 46514 TCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCC 46455 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| |||| ||||| | || ||| || || | || || ||| Sbjct 46454 TGGATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTC 46395 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || || ||||| || || Sbjct 46394 TTACCAGTCAAGGTCTTAACAAAGATCTG 46366 >seq2223 Length=74567 Score = 131 bits (144), Expect = 4e-25 Identities = 161/219 (74%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| || || | ||| ||||||||||||||||||| |||||| || || | || Sbjct 64287 TCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGT 64228 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||||||||||||||||||||| |||||||| || || || Sbjct 64227 TCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGG-TGGATGCC 64169 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 64168 TTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAG 64109 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || |||||||| || || || Sbjct 64108 GGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTG 64070 >seq3427 Length=45480 Score = 123 bits (136), Expect = 6e-23 Identities = 148/200 (74%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || |||||||||||||||| |||||| ||||| |||||||| |||||||||| ||| Sbjct 42305 TGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCTAAAGTCCTGCCATCTTCCAATTGC 42364 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||| || | |||||||| || |||||||| || ||||| || Sbjct 42365 TTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTC 42424 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || || | || || | ||||||| | ||| || || ||||| || || Sbjct 42425 GCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCT-CAAGGTAATGGTCTTTCCTGTA 42483 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || |||||||| ||||| Sbjct 42484 AGGGTCTTCACAAATATTTG 42503 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || ||||| ||||| |||||||| |||| |||||| || || | ||||||||||| || Sbjct 42071 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGTGTCCTTCCATCCTCG 42130 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 || ||||| ||||||||||| || | |||||||| || || || ||| |||||| Sbjct 42131 AGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTGA 42190 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 || || ||| || || | || || | ||||||| ||||| ||||| ||||| Sbjct 42191 ATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACCTCCAAAGTGATGGTCTTT 42250 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | || |||||||| || || Sbjct 42251 CCAGTTAAGGTCTTCACAAAGATCTG 42276 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || || || |||||||| || | |||||| |||||||||||| Sbjct 42514 CGAAGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTC 42573 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || || ||||| ||||| ||||| || | ||||||||| || || ||| Sbjct 42574 CTTCCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCT 42633 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || || | ||| || | | || || || | Sbjct 42634 TCCTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAACCTCGAGA 42693 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| ||||| Sbjct 42694 GTGATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTG 42731 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| ||||| ||||| || || | |||||| |||||||||||| Sbjct 41831 CGAAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTC 41890 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||||| ||| || || || || || | | ||||||||| || || || Sbjct 41891 CTACCATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCC 41950 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| |||||||| || ||| || || | ||| || | | || || ||||| Sbjct 41951 TCTTTGTCCTGAATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAA 42010 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || ||||| || || Sbjct 42011 GTTATGGTCTTTCCGGTCAAGGTCTTAACAAAGATCTG 42048 Score = 107 bits (118), Expect = 5e-18 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || || || || || |||||||||||||| ||||||||||| ||||||||| | |||||| Sbjct 41922 ATTTTTGCTGGTAAACAGTTGGAAGATGGTAGGACTTTGGCTGATTACAACATTCAGAAA 41863 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||||||||||||||||||| | | ||||| Sbjct 41862 GAGTCTACTCTTCACCTTGTTCTCCGTCTTCG 41831 Score = 104 bits (114), Expect = 6e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||||||||||||||| ||||| | || ||||||||||| | || ||||||||| Sbjct 42158 AAAGACTTATCTTCGCCGGTAAGCAACTCGAGGATGGAAGGACACTTGCAGATTACAACA 42099 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTG 201021 ||||||| ||||||||||||||||| || ||| Sbjct 42098 TCCAGAAGGAGTCTACTCTTCACCTCGTGTTG 42067 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| || | ||||| |||||||||||||||||||| Sbjct 42750 CAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATC 42809 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| ||||| || || || || | | ||| || || || ||| || || || Sbjct 42810 TTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGGGAATCCCCTCCTTGTC 42869 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || || | ||| || | | || || || | ||||| || Sbjct 42870 TTGGATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCCACCTCAAGAGTGATGGT 42929 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | ||||||||||| ||||| Sbjct 42930 CTTACCAGTTAAGGTTTTCACAAAGATTTG 42959 Score = 95.1 bits (104), Expect = 3e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||||||||| ||||| ||||| ||||||||||| |||||||| || ||||||||| Sbjct 42386 AAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAACA 42327 Query 200990 TCCAGAAAGAGTCTACTCTTCA 201011 |||| || ||||| || ||||| Sbjct 42326 TCCAAAAGGAGTCGACCCTTCA 42305 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||||||||| ||||| ||||| | || ||||||||||||||||| ||||||||| | || Sbjct 42609 ACTTATCTTTGCCGGTAAGCAACTCGAGGATGGAAGGACTTTGGCTGATTACAACATTCA 42550 Query 200994 GAAAGAGTCTACTCTTCACCTTGT 201017 ||| ||||| || ||||| || || Sbjct 42549 GAAGGAGTCCACACTTCATCTCGT 42526 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || || || || ||||| ||||||||||||||||||||||| |||||||| | ||||| Sbjct 42833 ATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAATATTCAGAAG 42774 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| || |||||||| || Sbjct 42773 GAGTCAACCCTTCACCTCGT 42754 >seq6102 Length=18543 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| |||||| ||||| | ||| | |||||||| |||||||||||||||||| Sbjct 17312 CCTTTCTGGATGTTGTAATCAGCAAGAGTGCGACCATCTTCAAGCTGCTTTCCGGCGAAG 17253 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || | | ||||||||||||| ||| ||| Sbjct 17252 ATCAACCTCTGCTGGTCCGGAGGAATACCT 17223 >seq753 Length=178373 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| |||||| ||||| | ||| | |||||||| |||||||||||||||||| Sbjct 81473 CCTTTCTGGATGTTGTAATCAGCAAGAGTGCGACCATCTTCAAGCTGCTTTCCGGCGAAG 81414 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || | | ||||||||||||| ||| ||| Sbjct 81413 ATCAACCTCTGCTGGTCCGGAGGAATACCT 81384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178753784194370