Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2223 96.9 4e-15 seq2770 93.3 5e-14 >seq2223 Length=74567 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| |||| ||| || || |||| || |||||||| |||||||| Sbjct 64257 CTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAA 64198 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | || | || ||||||||| |||||| ||||| | Sbjct 64197 GATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 64139 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | || || || || || || || ||||| || Sbjct 64138 GTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCAC 64079 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 64078 GAAGATCTGCATT 64066 >seq2770 Length=58540 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | ||||| || | || |||||| ||||| ||||| |||| Sbjct 46591 TGCCTCCACGGAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGG 46532 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || |||| ||||| || || ||||| || || | |||||||| || | | Sbjct 46531 CAAGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGG 46472 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCC 46543 | | | |||||| ||| ||| || ||||| ||| | | | |||||| ||||| Sbjct 46471 GAATTCCCTCCTTATCCTGGATTTTGGCCTTGA-CGTTGTCGATCGTGTCAGATGATTCA 46413 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | || || || || || |||| || ||||||||||| ||||| Sbjct 46412 ACTTCAAGAGTAATTGTCTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || | ||||| || | || || | ||||| || || || Sbjct 47009 CTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTCCAATTGCTTCCCCGCAAA 46950 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||| ||| || ||||| | Sbjct 46949 GATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCCTTGACATT 46890 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| ||||| |||| ||||||||||||||||| || || || Sbjct 46889 GTCAATTGTGTCAGAGCTC---TCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTT 46833 Query 46579 AACAAAGATTTGCAT 46593 || ||||||||||| Sbjct 46832 CACGAAGATTTGCAT 46818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565159902517200