Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3427 93.3 3e-14 seq2770 84.2 2e-11 >seq3427 Length=45480 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 ||||||| || | ||| || || | || | ||| ||||| || || || ||||| | Sbjct 41823 CGCCGCCACGAAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAG 41882 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||||| | |||| ||||| ||||| || ||||||| || | |||||| || | | Sbjct 41883 CCAAAGTCCTACCATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTG 41942 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTT 39667 | | || |||||||| | | |||| | |||| || ||| || || || | || | Sbjct 41943 GGATACCCTCTTTGTC-CTGAATTTTCGCCTTTACATTGTC--TATGGTATCCGAACTCT 41999 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| |||||||| || || || || || || || || || |||||||||||| Sbjct 42000 CCACCTCCAAAGTTATGGTCTTTCCGGTCAAGGTCTTAACAAAGATCTGCATG 42052 >seq2770 Length=58540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||||||| | ||| ||| || || || || |||||||| | ||| | || Sbjct 45890 AGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCC 45831 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | || |||||| |||| || || | ||||||||||| ||| | ||||| || || Sbjct 45830 TCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCC 45771 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || || | ||| | | | ||||| | ||| || || || | || || || Sbjct 45770 TGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGT 45712 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||| ||||||||||||||||||||| Sbjct 45711 CTTGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347322565070630