Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2770 134 1e-26 seq2223 102 8e-17 >seq2770 Length=58540 Score = 134 bits (148), Expect = 1e-26 Identities = 169/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || || |||||| |||| || ||| | | Sbjct 46591 ATGCAGATTTTTGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGAGCTCA 46650 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| | || || | ||||| || ||||||||| | ||||| Sbjct 46651 GACACAATCGACAACG-TTAAGGCCAAGATTCAGGACAAGGAAGGAATTCCC-CGGACCA 46708 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| ||| || || ||| |||| |||| |||||||| |||||||| Sbjct 46709 GCAACGTCTGATTTTCGCTGGAAAGCAGTTGGAGGACGGTCGCACCCTTGCTGACTACAA 46768 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| |||| ||||| ||||||||||||||||| || || Sbjct 46769 CATTCAGAAGGAGTCGACTCTGCACTTGGTGCTGCGTTTGAGGGGTGG 46816 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||||||||| || || ||||| ||||||||| |||| |||||| | Sbjct 45676 AATATGCAGATCTTCGTAAAAACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGC 45735 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || || || || |||||| | || Sbjct 45736 TCTGACACCATCGACAACG-TCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCGGA 45794 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| || | || | || || || ||||| || |||| || |||||| ||| || Sbjct 45795 TCAGCAGAGGTTGATCTTTGCCGGGAAGCAGCTTGAGGACGGACGAACCCTCGCCGATTA 45854 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| || |||||| | || || ||||||||||| Sbjct 45855 CAACATTCAGAAGGAATCCACCCTTCATTTGGTGCT 45890 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || |||||| |||| ||||| | || Sbjct 45907 ATGCAGATCTTCGTTAAGACTCTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCC 45966 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| |||||||| || || ||| | ||||| Sbjct 45967 GACACCATCGACAACG-TCAAAGCTAAGATCCAGGACAAAGAAGGGATCCCCCCAGACCA 46025 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || || || || |||| || || ||| ||| ||||| Sbjct 46026 GCAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTCGCCGATTACAA 46085 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| |||||| | || || || |||||||| Sbjct 46086 CATCCAGAAGGAATCCACACTCCACTTGGTGCT 46118 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || || |||||| |||| ||||| | || Sbjct 46135 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACGATCACCCTCGAGGTCGAATCTTCC 46194 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||| |||| |||||||| || || ||| | ||||| Sbjct 46195 GACACCATCGACAACG-TCAAAGCAAAGATCCAGGACAAAGAAGGGATCCCCCCGGACCA 46253 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||| || || || || || |||| || || || ||| ||||| Sbjct 46254 GCAGAGACTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTTGCCGATTACAA 46313 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| |||||| | || || || |||||||| Sbjct 46314 CATCCAGAAGGAATCCACCCTCCACTTGGTGCT 46346 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||||| || || |||||||||||| | || || ||||| || || | || || ||| Sbjct 46447 AAAATCCAGGATAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTAATCTTTGCCGGAAAA 46506 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || |||| || ||||| ||| ||||||||||| ||||| |||| || || Sbjct 46507 CAACTCGAGGACGGCCGTACCCTTGCCGATTACAACATCCAGAAGGAGTCGACTCTCCAC 46566 Query 38448 TTGGTGCTGCGT 38459 |||||||| ||| Sbjct 46567 TTGGTGCTTCGT 46578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||||||||||||||| | || || ||| | | Sbjct 46818 ATGCAAATCTTCGTGAAGACCCTTACGGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 46877 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||||||| ||||| || || || || | ||||| Sbjct 46878 GACACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCAGACCAG 46937 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||||| || || |||| || | || || || || |||||| Sbjct 46938 CAGCGTCTCATCTTTGCGGGGAAGCAATTGGAGGATGGTCGTACTCTTGCTGATTACAAC 46997 Query 38424 ATCCAAAAGGA 38434 || || ||||| Sbjct 46998 ATTCAGAAGGA 47008 >seq2223 Length=74567 Score = 102 bits (112), Expect = 8e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||| ||||| || || || || || || ||| | || || ||| | Sbjct 64063 AACAATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACTATAACCCTAGAGGTTGAGTC 64122 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | | || | || |||| ||||| || || || | | | || Sbjct 64123 TTCTGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCAC-CAGA 64181 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || ||||| | ||| || || ||||| || |||| || ||||| ||| || Sbjct 64182 CCAGCAACGTCTCATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGAACCCTAGCCGATTA 64241 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||||| |||| || || |||||||| Sbjct 64242 CAACATCCAAAAGGAGTCGACTCTTCACTTGGTGCT 64277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500103338502400