Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3427 134 5e-26 seq489 127 8e-24 seq2770 116 1e-20 seq356 100 1e-15 seq2658 89.7 2e-12 seq1285 89.7 2e-12 >seq3427 Length=45480 Score = 134 bits (148), Expect = 5e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| | |||||||| || || |||||||| || || ||| Sbjct 42962 ATGCAAATCTTTGTGAAAACCTTAACTGGTAAGACCATCACTCTTGAGGTGGAGAGTTCT 42903 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | |||| || || ||||| ||||| || ||||| || |||||| Sbjct 42902 GATACCATAGACAATGTTAAGGCTAAGATCCAAGACAAGGAGGGGATTCCCCCAGATCAA 42843 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || ||||| | ||||| ||| | ||||||||||| |||||||| ||||| ||| Sbjct 42842 CAGAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 42783 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| |||| |||||| Sbjct 42782 ATTCAGAAGGAGTCAACCCTTCAC 42759 Score = 102 bits (112), Expect = 3e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || || || || || || ||||| || ||||| || Sbjct 42735 AATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTTGAGAGTTC 42676 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | || || || |||||||||||||| || || || || || Sbjct 42675 TGATACCATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCA 42616 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || || | || || ||||| || |||||||| |||||||| ||||| || Sbjct 42615 GCAGAGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGAAGGACTTTGGCTGATTACAA 42556 Query 391229 TATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | |||||||| Sbjct 42555 CATTCAGAAGGAGTCCACACTTCA 42532 Score = 91.5 bits (100), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| || || || || || || || || ||||| ||||| || ||| || ||| Sbjct 42501 AATATTT--GTGAAGACCCTTACAGGAAAGACCATTAC-CTTGAGGTAGAAAGCTCGGAT 42445 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||||| | | || ||||||||||| ||||||||||| || || || || ||| Sbjct 42444 ACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 42385 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 | | || || | || || ||| | |||||||| || ||||| || ||||| || || Sbjct 42384 AGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAACATC 42325 Query 391233 GATAAGGATGCAACACTTCACTTAGT 391258 | ||||| | || ||||| || || Sbjct 42324 CAAAAGGAGTCGACCCTTCATTTGGT 42299 >seq489 Length=226806 Score = 127 bits (140), Expect = 8e-24 Identities = 191/267 (72%), Gaps = 12/267 (4%) Strand=Plus/Minus Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 || |||||||||||||| || | |||||||| || |||||||| || ||||| | Sbjct 125296 GCATATTTCAATGATGCTCAGAGACAAGCAACAAAGGATGCAGGCACCATAGCTGGGCTC 125237 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 ||||| | |||| || || || || || || || ||| | || ||||| ||| Sbjct 125236 AATGTGGCTAGAATAATCAACGAGCCCACTGCTGCAGCTTTTGCCTATGGTTTAG----- 125182 Query 451460 TCAAAAGAAA-CAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGA 451518 | |||||| || |||| | |||||||| || |||||| ||||||| || ||| ||| Sbjct 125181 --ATAAGAAAGGAGGAGAAGAGAATATTTTGGTGTTTGATCTTGGTGGTGGTACTTTTGA 125124 Query 451519 TACTTCTGTA-CTT-TCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576 | || ||| ||| | ||||| |||| || |||||||| ||| || | ||| ||| Sbjct 125123 T--GTCAGTATCTTGACCATTGATAATGGTGTCTTTGAAGTTTTGGCTACAAGTGGAGAT 125066 Query 451577 ACTCATCTAGGAGGTGAAGATATTGAT 451603 || ||||| || || |||||| ||||| Sbjct 125065 ACACATCTTGGTGGAGAAGATTTTGAT 125039 Score = 89.7 bits (98), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTG 451951 ||| |||| ||||||||||| ||||| ||| |||||||||| ||||| | ||||| Sbjct 124750 ATTCATGAGATTGTGCTTGTTGGAGGGAGTACTAGAATTCCTAAGGTTCAACAATTGTTG 124691 Query 451952 TCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCA 452011 | |||| || ||| ||| | ||| | || ||||||||||| ||||| || Sbjct 124690 AAGGAATTCTTTGATGGGAAAGAACCAAACAAGGGTGTTAATCCTGATGAGGCTGTGGCC 124631 Query 452012 TATGGTGCTGCAGTTCA 452028 ||||||||||||||||| Sbjct 124630 TATGGTGCTGCAGTTCA 124614 >seq2770 Length=58540 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || |||||||||| || ||||||||||| |||||||||||| Sbjct 46363 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAGACAATTACTCTTGAAGTTGAATCATCT 46422 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | || ||||| || |||||||| |||||||| || ||||| Sbjct 46423 GACACGATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAGGGAATTCCCCCAGATCAG 46482 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| |||| || | || |||||||| || || || | || | || ||||| || Sbjct 46483 CAGCGTCTAATCTTTGCCGGAAAACAACTCGAGGACGGCCGTACCCTTGCCGATTACAAC 46542 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 46543 ATCCAGAAGGAGTCGACTCTCCACTTGGT 46571 >seq356 Length=267683 Score = 100 bits (110), Expect = 1e-15 Identities = 167/236 (71%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 364566 ATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATTTTTTATGGAGCAAAT 364625 |||||||| | || ||||| || || ||| |||||| ||||| | | | | | Sbjct 35926 ATTCCATCAATGGTGGATGGCTTAAAGCCTGGTCAAAGGAAAATCCTCTTCTGTTCT--T 35983 Query 364626 TTAAGAGGA--TTAGAAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTTTTGTATCTG 364683 | ||||||| || | ||||| || ||| || ||||| || | |||| |||||||| Sbjct 35984 TCAAGAGGAACTTTGTGAAAGA---AGCAAAGGTTGCTCAGTTTTCTGGTTATGTATCTG 36040 Query 364684 ACCGGGTAGCTTATCATCACGGTGAGGCAAGT-TTAATGGGAGCAATAATTGGAATGGCA 364742 | | ||| || || || |||||||| ||| || ||| | || | |||||||||||| Sbjct 36041 AACATTCAGCCTACCACCATGGTGAGGCGAGTCTTGCTGGTACCA-TCATTGGAATGGCA 36099 Query 364743 CAAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGG 364798 ||| ||| |||||| ||||| ||| | ||| | || | ||||| || || ||||| Sbjct 36100 CAAGATTATGTTGGTAGTAACAATATCAATCTTTTACAGCCAAATGGTCAGTTTGG 36155 >seq2658 Length=61179 Score = 89.7 bits (98), Expect = 2e-12 Identities = 244/366 (67%), Gaps = 11/366 (3%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 || || |||||||| ||||| | | ||| |||| |||| | ||| | | | ||| Sbjct 55646 GAGGAGATTTCATCCATGGTGTTGATTAAGATGAGAGAAGTCTCTGAAGCTTTTCTCGGT 55705 Query 451307 T-CTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCA 451365 |||| || | | || || | ||||| || || |||||||| ||| | |||||||| Sbjct 55706 CACTCC-GTCAAAAACGCCGTCGTAACTGTACCAGCGTATTTCAACGATTCGCAACGGCA 55764 Query 451366 AGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 ||| || || ||||| ||| ||| | || || || || | | || || ||||| || Sbjct 55765 AGCGACGAAGGATGCTGGAGCGATTTCGGGATTGAACGTGTTGAGGATCATCAATGAGCC 55824 Query 451426 TACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAA---AAGA-AACAGAAGaaaaaa 451481 || || || ||| | || || ||| | ||| || || || | || ||| | | Sbjct 55825 GACCGCCGCGGCTATTGCGTACGGA-TTGGATAAGAAAGCTTCGAGAGTAGGCGAACAGA 55883 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTT--CAATTGA 451539 | || | | || ||| | || || |||||| |||| ||| | ||| | || || Sbjct 55884 ACGTTCTGATTTTCGATCTCGGCGGTGGAACTTTTGAT--GTCTCAATTTTAACGATCGA 55941 Query 451540 AGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATAT 451599 ||| || | || ||||| || || || || ||||||||||| |||||||||||| | Sbjct 55942 AGAAGGAATCTTCGAAGTTAAAGCTACAGCCGGAGATACTCATCTCGGAGGTGAAGATTT 56001 Query 451600 TGATAA 451605 ||||| Sbjct 56002 CGATAA 56007 >seq1285 Length=121573 Score = 89.7 bits (98), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || || || ||||| ||| | ||| | |||||| |||||||| || | ||| Sbjct 51379 ACTGTCCCTGCATACTTCAACGATTCTCAAAGAACAGCAACAAAAGATGCTGGTCGGATT 51438 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||||||| | |||||||| ||||| ||||| || || || || | ||||||||||| Sbjct 51439 GCTGGTTTGGAAGTTCTTCGTATTATAAATGAGCCAACCGCTGCATCATTAGCATATGGA 51498 Query 451451 CT----AGGAAAATCAA 451463 | ||||||| ||| Sbjct 51499 TTTGAAAGGAAAAACAA 51515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975437162659880