Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1439 104 3e-17 >seq1439 Length=111383 Score = 104 bits (114), Expect = 3e-17 Identities = 253/380 (67%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||||||||| ||||||||||| || || || | ||||||||| | Sbjct 101129 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 101188 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | || | || || |||||||| ||||| || || || ||||| Sbjct 101189 TCCAAGACCAGCCCCTCTCTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA 101248 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || || |||| | | | || ||||| | |||||| || | || || || || Sbjct 101249 -GGGTGCTTTTGACTTG-GCCTTCTCAAACAAATCCCGGACTCTGGACGCACCAACTCCC 101306 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||||| |||||||| | || || | |||| || || || || | ||||| Sbjct 101307 ACAAACAATTCCACAAACTCTGAAGCTGCACATGAGAAAAACGGCACGCCGGCCTCACCA 101366 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 || | ||||| || | ||| ||||| || ||||| || || | || || ||| Sbjct 101367 GCCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGGTGGTCCAACAAGAAGACACCCT 101426 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 ||| ||||| || ||| | || ||| | || || | ||| | ||||| || | Sbjct 101427 TTTGGGATCTTAGCTCCAAGTGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACCACT 101486 Query 16332 TCTTCCAATTCATCTTTGGC 16351 |||| || |||| ||| || Sbjct 101487 TCTTGCAGTTCAAGTTTTGC 101506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620656194399200