Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1439 104 3e-17 >seq1439 Length=111383 Score = 104 bits (114), Expect = 3e-17 Identities = 254/380 (67%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||||||||| || |||||||| || || || | ||||||||| | Sbjct 101129 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 101188 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | |||||| | | || | || || |||||||| ||||| || || ||||| || Sbjct 101189 TCCAAGACCAGCCCCTCTCTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA 101248 Query 9401 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || || |||| | ||| | ||||| | ||| || || || || || || || | Sbjct 101249 -GGGTGCTTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCTGGACGCACCAACTCCCA 101307 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| |||||||| | || || | |||| || || || || | ||||| | Sbjct 101308 CAAACAATTCCACAAACTCTGAAGCTGCACATGAGAAAAACGGCACGCCGGCCTCACCAG 101367 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC- 9578 | | ||||| || | ||| ||||| || ||||| || | || | || | ||||| Sbjct 101368 CCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGG-TGGTCCAACAAGAAGACACCCT 101426 Query 9579 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638 ||| ||||| || ||| | || ||| | || || | ||| | ||||| || | Sbjct 101427 TTTGGGATCTTAGCTCCAAGTGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACCACT 101486 Query 9639 TCTTCCAATTCATCTTTGGC 9658 |||| || |||| ||| || Sbjct 101487 TCTTGCAGTTCAAGTTTTGC 101506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589898866416400