Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3427 174 3e-38 seq2223 165 2e-35 seq2770 161 2e-34 >seq3427 Length=45480 Score = 174 bits (192), Expect = 3e-38 Identities = 171/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 || || | ||| || ||||||||||| ||||| || || || |||||||| ||||| || Sbjct 42059 CTCAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGTGTC 42118 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || ||||| ||||| |||||||| ||||||||||||| ||| |||||||| || ||||| Sbjct 42119 CTTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATGCCC 42178 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 |||||||| |||||||| ||| || || || || || ||||| ||||| || || | Sbjct 42179 TCTTTGTCCTGAATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACCTCCAAA 42238 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| || || || || || || | ||||| Sbjct 42239 GTGATGGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 Score = 168 bits (186), Expect = 1e-36 Identities = 160/203 (79%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| ||||| || |||||||| || | ||| || |||||||| | ||| Sbjct 42305 TGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCTAAAGTCCTGCCATCTTCCAATTGC 42364 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || |||||||||| ||| |||||||| || || ||||| |||||||||||||| Sbjct 42365 TTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTC 42424 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || ||||| || ||||| ||||| || |||| ||||| ||||||||||| Sbjct 42425 GCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCTCAA-GGTAATGGTCTTTCCTGTA 42483 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| Sbjct 42484 AGGGTCTTCACAAATATTTGCAT 42506 Score = 163 bits (180), Expect = 6e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| |||||||| || ||||| |||||||| || | ||| || ||||| ||| Sbjct 42526 ACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCG 42585 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || |||||||| || |||||||||| || |||||||| || || ||||| || ||||| Sbjct 42586 AGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGG 42645 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || |||||||| || ||||| || || || || || | |||||| Sbjct 42646 ATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAACCTCGAGAGTGATGGTCTTT 42705 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | || || || || | ||||||| Sbjct 42706 CCTGTAAGGGTCTTCACAAATATTTGCATT 42735 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| |||||||| ||||| |||||||| || | ||| || |||||||| Sbjct 41842 AACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTC 41901 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| ||||| || || || | | || |||||||| || || || |||||||| || Sbjct 41902 CAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTG 41961 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||| || || || ||||| |||||||| ||||| || | || | ||||| Sbjct 41962 AATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTT 42021 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || || || || | ||||| Sbjct 42022 TCCGGTCAAGGTCTTAACAAAGATCTGCAT 42051 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || |||||||||||||| || | ||| || |||||||| Sbjct 42754 ACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCC 42813 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || || || || | | ||||| ||||| ||||| || || |||||||| Sbjct 42814 AATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGGGAATCCCCTCCTTGTCTTGG 42873 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||| || ||||| ||||| ||||| || | ||||| Sbjct 42874 ATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTCTTA 42933 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTA 195143 || || || ||||| || || | |||||| || Sbjct 42934 CCAGTTAAGGTTTTCACAAAGATTTGCATCTA 42965 >seq2223 Length=74567 Score = 165 bits (182), Expect = 2e-35 Identities = 171/223 (77%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || | ||||||||| ||||| ||||| || ||||||||||| || || Sbjct 64287 TCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGT 64228 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || || |||||||| || |||||||| || ||||| |||||||| || ||||| Sbjct 64227 TCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG-ATGCC 64169 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || |||||| || || |||||||| ||| || || || || Sbjct 64168 TTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAG 64109 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| | ||||| ||||| | ||||| ||||| | |||||| Sbjct 64108 GGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATT 64066 >seq2770 Length=58540 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||||||||||||||| | || || || || || Sbjct 46338 GTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGTCCTCAAGTTG 46279 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| |||| || ||||| || || || ||||||||||| || || || Sbjct 46278 CTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCCTGGATCTT 46219 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||||| || |||||||| ||| ||| || || ||||| | ||||||||| || Sbjct 46218 TGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTTCCAGT 46159 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 46158 CAAAGTCTTAACGAAGATCTGCAT 46135 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| || || ||||| || ||||| |||||||| |||||||| | ||||| || Sbjct 47027 AACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTC 46968 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || || ||||| || || || ||||||||||| |||||||| |||||||| Sbjct 46967 CAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTG 46908 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| |||||| || ||||| ||||| || || ||||| || | || | || || Sbjct 46907 GATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTT 46848 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 46847 GCCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| ||||| || || ||||| ||||||||||| || |||| || || || |||||| Sbjct 45881 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCCTCAAGCTGC 45822 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | | || || || || ||||| ||||| || || || || || Sbjct 45821 TTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCCTGGATCTTA 45762 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| || |||||||| || || || || || ||||| | ||||| || || Sbjct 45761 GCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTT 45702 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||||||||| | ||||| Sbjct 45701 AGAGTTTTTACGAAGATCTGCAT 45679 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||||||||| ||||| | || || || || || Sbjct 46110 GTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGTCCGTCCTCAAGTTG 46051 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || | || |||||||| || || ||||||||||| || || || Sbjct 46050 CTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCCTGGATCTT 45991 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||| || |||||||| ||| ||| || || ||||| | ||||| || || Sbjct 45990 AGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATAGTCTTCCCGGT 45931 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 45930 TAGAGTCTTAACGAAGATCTGCAT 45907 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| || || || |||||||||||||| || | || || ||||| || Sbjct 46566 GTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGAGTTG 46507 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| || || || || ||||| ||||| || || || || || ||||| Sbjct 46506 TTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGGATTTT 46447 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || ||||| || ||| |||||||| |||| ||||| || || Sbjct 46446 GGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCTTACCAGT 46387 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 46386 CAAGGTCTTAACAAAGATCTGCAT 46363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109323668761370