Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2770 100 2e-16 seq2223 93.3 3e-14 seq3427 86.0 4e-12 >seq2770 Length=58540 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||||| | || || ||||||||||| ||||| | | Sbjct 46816 CCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCA 46757 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||| ||| ||||| || || || || ||||||||||| | || Sbjct 46756 AGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTC-CGGGGA 46698 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| || ||| | || | || | ||| || Sbjct 46697 ATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACC 46638 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| || || || || ||||| ||||| ||||| |||||||| Sbjct 46637 TCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| ||| ||||||||||| || || | ||| ||||| | || || Sbjct 45887 ACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCCTCA 45828 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || | | ||||| || | || | || ||||| || Sbjct 45827 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCCTGG 45768 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | ||| | ||| || |||| ||| ||||| || Sbjct 45767 ATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTG 45708 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || || ||||| || || ||||||||||||||| Sbjct 45707 CCGGTTAGAGTTTTTACGAAGATCTGCATATTC 45675 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| || || | ||| | ||| | || || Sbjct 46343 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGTCCTCA 46284 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || |||||||| || || |||| |||||||| | || | ||| || ||||| Sbjct 46283 AGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCCTGG 46224 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | || | || | || || |||| ||| || || ||| Sbjct 46223 ATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTT 46164 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||| || |||||||||||| Sbjct 46163 CCAGTCAAAGTCTTAACGAAGATCTGCATA 46134 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | |||| ||| ||||| ||||| || || | || | ||| | || || Sbjct 46115 ACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGTCCGTCCTCA 46056 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || |||||||| || || || | ||||||||| | || | ||| || ||||| Sbjct 46055 AGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCCTGG 45996 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | || | || | || || |||| ||| || || || Sbjct 45995 ATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATAGTCTTC 45936 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| || ||||||||||| Sbjct 45935 CCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| || || | |||| | || | || || Sbjct 46571 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCG 46512 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || |||||||||||||| ||||| || ||||| ||| | || | |||||||| || Sbjct 46511 AGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGG 46452 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | |||| ||| | ||||| || | || || || || Sbjct 46451 ATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCTTA 46392 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| ||||||||||||||| Sbjct 46391 CCAGTCAAGGTCTTAACAAAGATCTGCATA 46362 >seq2223 Length=74567 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| || | || | |||||||||| || || || || ||||| || || | Sbjct 64293 TCCTCCTCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGC 64234 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| |||| | || || ||||| |||||||| || || || |||||||||||| | || Sbjct 64233 TAGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG 64174 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCT 34929 | || |||||||| ||||| ||||| || | ||||| ||| | || Sbjct 64173 -ATGCCTTCCTTGTCCTGGATCTTAGCCTTGAC--AT--TGTCGATGGTGTCAGAAGACT 64119 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || | |||||| || || || || || || ||||| ||||||||||| Sbjct 64118 CAACCTCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 64067 >seq3427 Length=45480 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | ||| || | ||||| || || ||||| ||||| || || | | Sbjct 42053 CCACCCCTCAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCA 42112 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | |||| || || || || ||||| || || |||| |||||||||| | || Sbjct 42113 AGTGTCCTTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGG 42172 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| ||| ||| || || |||| | || | || || Sbjct 42173 ATGCCCTCTTTGTCCTGAATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACC 42232 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || ||||| ||||| || | |||||||||||||||||||| Sbjct 42233 TCCAAAGTGATGGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324589643596080