Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2770 104 2e-17 seq3427 91.5 1e-13 >seq2770 Length=58540 Score = 104 bits (114), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | |||| |||||| || || || ||| || ||||| ||||| |||| Sbjct 46816 CCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCA 46757 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||||||||| || || || ||||| || || || |||| |||| Sbjct 46756 AGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCG-GGGA 46698 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| || || | | | ||||| ||||||| Sbjct 46697 ATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACC 46638 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||| || || || | || || |||||||||||||| Sbjct 46637 TCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 >seq3427 Length=45480 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | |||| ||| | || || || ||| || |||||||||||||||| Sbjct 42736 CCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCC 42795 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | | | || ||||| ||||| || ||||| |||| | ||||||||| | |||| Sbjct 42796 AAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGGGA 42855 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | | || || ||||||| Sbjct 42856 ATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCCACC 42915 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || || ||||| ||||| || |||||| Sbjct 42916 TCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCATC 42963 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| |||||||||| | | | | | | || |||||||| ||||| ||||| Sbjct 41860 CTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGTTTACCAGCAAA 41919 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| || || | || | ||||| ||||| ||| || |||||| Sbjct 41920 AATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTTTCGCCTTTACATT 41979 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || || || ||||| ||||| || || || Sbjct 41980 GTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGTCAAGGTCTTAAC 42039 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 42040 AAAGATCTGCAT 42051 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||||||||| || || ||| ||||| || |||||||||| Sbjct 42280 GCCACCCCTCAGACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGC 42339 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | | || ||||| |||||||||||||| || |||| || || || | || Sbjct 42340 TAAAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGG 42399 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || |||||||| ||| || |||||| | | | || || || || Sbjct 42400 GATTCCTTCCTTGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTAC 42459 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || ||||| || | || || ||||| || ||||| Sbjct 42460 CT-CAAGGTAATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380886019858530