Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3427 102 7e-17 >seq3427 Length=45480 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 28543 ATTGTGTAA----AAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCC 28598 ||||||||| | |||||||| ||||| ||||| ||||| ||||| ||||| || Sbjct 42977 ATTGTGTAATTTTAGATGCAAATCTTTGTGAAAACCTTAACTGGTAAGACCATCACTCTT 42918 Query 28599 GAAACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGA 28658 || ||| ||| || || | | | || | ||| || ||| ||||| ||||| Sbjct 42917 GAGGTGGAGAGTTCTGATACCATAGACAATGTTAAGGCTAAGATCCAAGACAAGGAGGGG 42858 Query 28659 GTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACT 28718 | ||| |||||||||||| | || ||||| || || |||||||||||| | ||| Sbjct 42857 ATTCCCCCAGATCAACAGAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACT 42798 Query 28719 ATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 |||| ||||| || ||||| || || || || || ||| Sbjct 42797 TTGGCTGATTACAATATTCAGAAGGAGTCAACCCTTCAC 42759 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || ||||| || || ||| ||| Sbjct 42051 ATGCAGATCTTTGTTAAGACCTTGACCGGAAAGACCATAACTTTGGAGGTGGAGAGTTCG 41992 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||||| ||||||||||| | || ||| || Sbjct 41991 GATACCATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATCCCACCAGACCAG 41932 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| || ||||| ||||||||| || ||| |||| ||||| ||| Sbjct 41931 CAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTAGGACTTTGGCTGATTACAAC 41872 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||| |||||||| ||| Sbjct 41871 ATTCAGAAAGAGTCTACTCTTCAC 41848 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || || ||||||||| || ||| || Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTACCTT-GAGGTAGAAAGCTCG 42448 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||||| ||||| || ||| | || ||| || Sbjct 42447 GATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 42388 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||||||||| || || |||||||||||| | ||| | || ||||| ||| Sbjct 42387 CAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAAC 42328 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| || || || || || |||| Sbjct 42327 ATCCAAAAGGAGTCGACCCTTCATTTGGT 42299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425347198860690