Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1831 104 1e-17 >seq1831 Length=90912 Score = 104 bits (114), Expect = 1e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 |||||||||||| || || ||||| |||||||| || || | ||||| ||||| ||||| Sbjct 15784 AAAACTACCTTTCCTCTTCCCTCCCCCTTGATCAACATAACGGGCAGTATCATTAAAAAC 15843 Query 26119 TTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGT 26178 | | ||| ||||| | ||| |||| ||| ||||| | | |||| | ||||| Sbjct 15844 TCGTATCATAGGAACAATGCCATTTGATGTTCCATTTGTCCCACGAATATAACTCCCTGT 15903 Query 26179 CGATCTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCAC 26237 | | ||| | |||| | ||| | ||| ||||| ||||| |||| ||| | |||| Sbjct 15904 GGCACGAATGTTGTGAAC-TGAGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCAC 15962 Query 26238 AATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||| | ||||| | || |||| ||||||||| ||||||| Sbjct 15963 ACTCTTTCAAGGTATCATATATGCCTTCAATGCTATCATCTTTCAT 16008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253005737593250