Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1439 95.1 1e-14 >seq1439 Length=111383 Score = 95.1 bits (104), Expect = 1e-14 Identities = 250/379 (66%), Gaps = 2/379 (1%) Strand=Plus/Minus Query 175213 GCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGA 175272 || ||| |||||| |||| | || ||||| | ||| | || || | || || | Sbjct 101506 GCAAAACTTGAACTGCAAGAAGTGGTTGATTTCTTGAAGAACCCAGATAAGTACACTGCA 101447 Query 175273 AGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACC 175332 ||| || |||||||| ||| ||||| | || || ||||| ||||||||| Sbjct 101446 CTTGGAGCTAAGATCCCAAAAGGGTGTCTTCTTGTTGGACCACCTGGTACTGGAAAGACC 101387 Query 175333 CTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCA 175392 || | || ||||| | || ||||| | || || || || || | || || Sbjct 101386 CTTTTGGCTCGAGCAGTGGCTGGTGAGGCCGGCGTGCCGTTTTTCTCATGTGCAGCTTCA 101327 Query 175393 AACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452 | |||||||| ||||||| || || ||||| || || || ||| | ||||| | Sbjct 101326 GAGTTTGTGGAATTGTTTGTGGGAGTTGGTGCGTCCAGAGTCCGGGATTTGTTTGAGAAG 101267 Query 175453 GCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511 ||| | |||| || || || ||||| || || ||||| |||||||| || || | || Sbjct 101266 GCCAAGTCAAAAGCACCC-TGCATTGTGTTTATAGATGAAATTGATGCAGTTGGGAGACA 101208 Query 175512 ACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 | | |||||| | | ||||| |||||||| || || ||||| || ||| | Sbjct 101207 GAGAGGGGCTGGTCTTGGAGGTGGGAATGATGAGAGAGAGCAGACCATTAACCAGCTATT 101148 Query 175572 CACCGAGATGGATGGCTTT 175590 || ||||||||||| ||| Sbjct 101147 GACAGAGATGGATGGGTTT 101129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596486751396800