Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3427 122 2e-22 seq2770 95.1 2e-14 seq2223 84.2 4e-11 >seq3427 Length=45480 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | ||||| || ||||| | ||| | ||| || ||| || Sbjct 42499 ATTTGCATACCGCCACGAAGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTG 42558 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || || ||| || | ||| || |||||||| || | |||||| || Sbjct 42559 TAATCAGCCAAAGTCCTTCCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGG 42618 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || || | || | ||| ||| ||||| ||| Sbjct 42619 TCTGGTGGGATACCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAA 42678 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||| || ||||| || || || ||||| || || || ||||||||||||||| Sbjct 42679 CTCTCAACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATT 42735 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| ||||| || || || || || | || | ||| || |||||| Sbjct 42727 ATTTGCATTCCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTG 42786 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || || ||| || ||||| || || |||||||| || ||||||||| Sbjct 42787 TAATCAGCCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGA 42846 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || ||||| || || | || | ||| || ||||| ||| Sbjct 42847 TCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGTATCAGAA 42906 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || ||||| || || ||||| |||| ||||| ||||| |||||||| Sbjct 42907 CTCTCCACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 Score = 105 bits (116), Expect = 1e-17 Identities = 162/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| |||| || || |||| ||| | || | ||| || || || || || Sbjct 42278 ATGCCACCCCTCAGACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCA 42337 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||| || || ||| || ||||| || |||||||| || | ||| || || || || Sbjct 42338 GCTAAAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGT 42397 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| ||||| | |||| ||| ||| ||||| || || Sbjct 42398 GGGATTCCTTCCTTGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCT 42457 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || || || |||||||||||||| Sbjct 42458 ACCTCAAG-GTAATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 >seq2770 Length=58540 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||||||| |||| | ||| ||||| || || ||||| || ||| Sbjct 46517 TCCTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTA 46458 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| || | || || || || || || |||||||| ||||| || Sbjct 46457 TCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATT 46398 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || | || || ||||| || ||||| Sbjct 46397 GTCTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 >seq2223 Length=74567 Score = 84.2 bits (92), Expect = 4e-11 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| || |||||||| || || | | || || || || || || ||||| || Sbjct 64220 TCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCCTTG 64162 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| || || || ||||||||||| ||||| |||||| Sbjct 64161 TCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATA 64102 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || |||||||| ||||| || || || |||||| Sbjct 64101 GTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATT 64066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899529460495200