Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3427 122 2e-22 >seq3427 Length=45480 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||||| || || | | |||| |||||||| || |||||||| || || ||| Sbjct 42781 ATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTC 42840 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| || || || || || || ||||| || ||| || ||||| ||| | | Sbjct 42841 TGTTGATCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGTA 42900 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || ||||| ||||| ||||||||||| ||||| | ||| || ||| Sbjct 42901 TCAGAACTCTCCACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGC 42960 Query 192535 AT 192536 || Sbjct 42961 AT 42962 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || | || | ||||| |||||| || || ||||||| Sbjct 41825 CCGCCACGAAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCC 41884 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || | |||| ||||| |||||||||||||| || || ||||| || || ||||| Sbjct 41885 AAAGTCCTACCATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 41944 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || ||||| || || ||||| |||||||| ||| | ||| || || || Sbjct 41945 ATACCCTCTTTGTCCTGAATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACC 42004 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| ||||| || || || || || |||| ||| |||||||| Sbjct 42005 TCCAAAGTTATGGTCTTTCCGGTCAAGGTCTTAACAAAGATCTGCAT 42051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984339862348500