Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3427 114 2e-20 >seq3427 Length=45480 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||||| |||||| ||| || ||||| | |||| | | || ||||| |||||||| Sbjct 41854 AGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGTTTACC 41913 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 ||||||||| || ||||| ||||| ||||| || || ||||| || || ||||| || Sbjct 41914 AGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTTTCGCCTT 41973 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| ||| ||||| || || || || | ||| ||||| || || || || || Sbjct 41974 TACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGTCAAGGT 42033 Query 172052 TTTAATGAATATCTGCAT 172069 |||| || |||||||| Sbjct 42034 CTTAACAAAGATCTGCAT 42051 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| | |||| | | | || |||||||| || ||||||||||| || || Sbjct 42780 AATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCT 42839 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||| || || || || || || || ||||| || ||| || ||||| ||| || Sbjct 42840 CTGTTGATCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGT 42899 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || || || ||||| ||||| ||||||||||| ||||| | || || || Sbjct 42900 ATCAGAACTCTCCACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTG 42959 Query 172067 CAT 172069 ||| Sbjct 42960 CAT 42962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905010299238000