Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1439 95.1 4e-14 >seq1439 Length=111383 Score = 95.1 bits (104), Expect = 4e-14 Identities = 321/489 (66%), Gaps = 22/489 (4%) Strand=Plus/Plus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT- 288932 ||||| | ||| | | ||| | ||||| || || |||||||| | | | ||| Sbjct 101064 AATGCAGAGTCAAGAACATCAGGCCTGTTAGTGGCAGCCAATACTATCACAC---CGGAA 101120 Query 288933 TTGCTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCA 288990 |||| | ||| |||||||| ||| || | || |||| || || || || |||||| Sbjct 101121 TTGCCTGAAAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCA 101180 Query 288991 TTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCA 289050 || ||||| | || || ||| | | | | ||||| ||||||||||| || Sbjct 101181 TTCCCACCTCCAAGACCAGCCC-----CTC-TCTGTCTCCCAACTGCATCAATTTCATCT 101234 Query 289051 ATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG-CAAATAATTCTCTTACACGGGA 289109 || || | | || || | ||||| || | || |||| || || | || | ||| Sbjct 101235 ATAAACACAATGCAGGGTGC-TTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCTGGA 101293 Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTA 289168 || |||| || ||| ||| ||| ||||| || ||||| | || ||| | || | | Sbjct 101294 CGCACCAACTCCCACAAACAATTCCACAAACTCTGAAGCTGC-ACATGAGAAAAACGGCA 101352 Query 289169 CATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCT 289228 | || || || || ||||| | |||| ||| ||||| || || ||||||||||| Sbjct 101353 CGCCGGCCTCACCAGCCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGGTGGTCCAA 101412 Query 289229 CTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGACTTATATTTCTCAGGGCTCT 289285 | | ||| || ||||| | || || ||| |||| | || || || ||| ||| Sbjct 101413 CAAGAAGACACCCTTTTGGGATCTTAGCTCCAAGTGCAG---TGTACTTATCTGGGTTCT 101469 Query 289286 TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAG 289345 | || || || || | ||| | |||||| |||||| | || ||| || ||||||| Sbjct 101470 TCAAGAAATCAACCACTTCTTGCAGTTCAAGTTTTGCTTGGTCTGCTCCAGCAACATCAG 101529 Query 289346 CAAAAGTAA 289354 |||||||| Sbjct 101530 AAAAAGTAA 101538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471608091364070