Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2770 93.3 3e-14 seq3427 89.7 4e-13 >seq2770 Length=58540 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-G 110324 || || ||||| || || || |||||| |||||||||| ||||| ||| |||| || | Sbjct 45673 TTGAATATGCAGATCTTCGTAAAAACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAG 45732 Query 110325 AGC-CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCC 110383 ||| ||||| || ||| | | || || ||||| || || ||||| | ||| Sbjct 45733 AGCTCTGAC---ACCATCGACAACGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCC 45789 Query 110384 GTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 |||||| || || | || | ||| || || ||||| ||||| | |||| | || Sbjct 45790 CCGGATCAGCAGAGGTTGATCTTTGCCGGGAAGCAGCTTGAGGACGGACGAACCCTCGCC 45849 Query 110444 GATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || ||||| || | || ||||| |||| || || || || Sbjct 45850 GATTACAACATTCAGAAGGAATCCACCCTTCATTTGGTGCTAAGGCTCCGTGGTGG 45905 >seq3427 Length=45480 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || ||||| || ||||| || | || |||| | Sbjct 42051 ATGCAGATCTTTGTTAAGACCTTGACCGGAAAGACCATAACTTTGGAGGTGGAGAGTTCG 41992 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | ||||| ||| ||| |||||||| || | || || || Sbjct 41991 GATACCATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATCCCACCAGACCAG 41932 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| ||| ||||||||| |||| |||| || || |||| ||||||||| Sbjct 41931 CAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTAGGACTTTGGCTGATTACAAC 41872 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| ||||| ||||| Sbjct 41871 ATTCAGAAAGAGTCTAC 41855 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GCCTG 110330 ||||| || ||||| || || ||||| || || ||||| || | || || || | Sbjct 42279 ATGCAGATCTTTGTGAAGACCTTAACTGGAAAGACCATCACTTTGGAGGTAGAAAGCTCG 42220 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| | | | | ||||| ||| ||| |||||||| ||| | || || | Sbjct 42219 --GATACAATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCACCAGACC 42162 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | ||||||||||| | || ||||| || || ||||||| || ||| | || ||||||| Sbjct 42161 AGCAAAGACTTATCTTCGCCGGTAAGCAACTCGAGGATGGAAGGACACTTGCAGATTACA 42102 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||| || || || ||||| | ||| | ||||| Sbjct 42101 ACATCCAGAAGGAGTCTACTCTTCACCTCGTGTT 42068 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/215 (69%), Gaps = 11/215 (5%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACC-----GTCGAAACGGAGC 110327 |||||||||||||| || || | || || || ||||||||| || |||| || Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTACCTTGAGGTAGAAA----GC 42451 Query 110328 CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 | ||||| | | | | ||||| ||| ||| ||||| ||||| | || | Sbjct 42450 TCG--GATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAG 42393 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 | || ||||||||||| | ||| ||||| || |||| |||| ||| || | || |||| Sbjct 42392 ACCAGCAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATT 42333 Query 110448 ACAACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||| ||||| || || || | || ||||| Sbjct 42332 ACAACATCCAAAAGGAGTCGACCCTTCATTTGGTG 42298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412785699957230