Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2770 120 2e-22 seq2223 111 1e-19 seq3427 109 4e-19 >seq2770 Length=58540 Score = 120 bits (132), Expect = 2e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | ||| |||| ||| | || ||||||||||||||| ||||| | Sbjct 46816 CCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCA 46757 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || |||| |||||||| ||||| ||||| ||||||||||| | || Sbjct 46756 AGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTC-CGGGGA 46698 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || || ||| | || | || | ||| || Sbjct 46697 ATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACC 46638 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| || ||||| || ||||||||||| ||||| ||||||||| Sbjct 46637 TCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATG 46590 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||| ||| | |||| |||||||| ||||| || || | || | || | Sbjct 46350 CCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCC 46291 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || || ||||||||||||||||||||||||| |||||||| | || | ||| || || Sbjct 46290 GTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTT 46231 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || ||| ||||||| | || | || | ||||| || | ||| || Sbjct 46230 GTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGAT 46171 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || | ||||| || ||||||||||| Sbjct 46170 CGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||| ||| | ||| |||||||| ||||| || || | || | || | Sbjct 46122 CCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGTCC 46063 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || || ||||||||||||||||||||||| | ||||||||| | || | ||| || || Sbjct 46062 GTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCTTT 46003 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || || ||||||| | || | || | ||||| || | ||| || Sbjct 46002 GTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGAT 45943 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || || ||||| || |||||||||||| Sbjct 45942 AGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCATG 45906 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| || || | ||| | || | || || ||||| |||||||| || Sbjct 46554 CTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCAAA 46495 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| ||| | || | |||||||| || | ||||| |||||| Sbjct 46494 GATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 46435 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| ||| | || || |||| || || ||||| || || | |||||| || Sbjct 46434 GTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCTTACCAGTCAAGGTCTTAAC 46375 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 46374 AAAGATCTGCAT 46363 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||||||||| || || | || | || |||| Sbjct 47029 AGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCC 46970 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| || || ||||| || || ||||||||| | || | || |||||||| Sbjct 46969 TCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCT 46910 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||||| | || | ||| | ||| || || | || ||||| Sbjct 46909 TGGATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTT 46850 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| || ||||| ||||| Sbjct 46849 TTGCCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||| |||| |||| |||||||||||||| || || | ||| | || | Sbjct 45894 CCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCC 45835 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || || || ||||| ||||| ||||||| | ||||| || | || | || ||||| Sbjct 45834 GTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTT 45775 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || |||||| | || | ||| | |||||| || | ||| || Sbjct 45774 ATCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGAT 45715 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || || || ||||| ||||||||||| Sbjct 45714 GGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 >seq2223 Length=74567 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| || | || || |||| ||||| || |||||| || ||||| || || | Sbjct 64293 TCCTCCTCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGC 64234 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 |||| | || | || || || ||||||||||||||||| || |||||||||||| | || Sbjct 64233 TAGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG 64174 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCT 34925 | || |||||||| | || || ||||| || | ||||| ||| | || Sbjct 64173 -ATGCCTTCCTTGTCCTGGATCTTAGCCTTGAC--AT--TGTCGATGGTGTCAGAAGACT 64119 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || | |||||| ||||| || || ||||| || || ||||||||||| Sbjct 64118 CAACCTCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 64067 >seq3427 Length=45480 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || ||||||| || ||||||||| ||||| || || | Sbjct 42053 CCACCCCTCAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCA 42112 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| || |||||||| ||||||||||| |||| |||||||||| | || Sbjct 42113 AGTGTCCTTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGG 42172 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | ||||| || || |||| | || | || || Sbjct 42173 ATGCCCTCTTTGTCCTGAATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACC 42232 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || ||||||||||| || | |||||| ||||||||||||||| Sbjct 42233 TCCAAAGTGATGGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCATG 42280 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| |||||||| | ||| || ||||||| ||| |||||||||||| || || || | Sbjct 42734 TTCCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAG 42793 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | |||| |||| |||||| || || || |||| | || || ||| | | Sbjct 42794 CCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGG 42853 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | |||||||||||| | || || || || |||| | ||| ||| | Sbjct 42854 GAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCCA 42913 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || |||||||| || || | ||| || |||||||| ||||| Sbjct 42914 CCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| ||||||||||||||| || || | | | | |||| Sbjct 42523 AGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCC 42582 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| ||||| |||| ||||||||| | || | || ||||| || Sbjct 42583 TCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTCCTTATCT 42642 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | ||| ||| || || | || |||||| Sbjct 42643 TGGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAACCTCGAGAGTGATGGTC 42702 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || |||||||| ||||| || ||||| Sbjct 42703 TTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325648700177090