Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2770 89.7 4e-13 seq3427 82.4 6e-11 >seq2770 Length=58540 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 107549 GTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGA 107608 ||| || ||||| || || || |||||| |||| ||||| ||||| ||| |||| || Sbjct 45672 GTTGAATATGCAGATCTTCGTAAAAACTCTAACCGGCAAGACCATCACCCTCGAGGTCGA 45731 Query 107609 G-GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 | ||| || || ||| | | || || ||||| ||||| ||||| | ||| Sbjct 45732 GAGCTCT-GACACCATCGACAACGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCC 45790 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 |||||||||||| | || | ||| || || ||||| ||||||| ||| | || | Sbjct 45791 CGGATCAGCAGAGGTTGATCTTTGCCGGGAAGCAGCTTGAGGACGGACGAACCCTCGCCG 45850 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 | ||||||||||| ||||| || || | || ||||| Sbjct 45851 ATTACAACATTCAGAAGGAATCCACCCTTCATTTGGTG 45888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || | || || || || || ||| |||| |||| ||| Sbjct 46591 ATGCAGATTTTTGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGAGCTCA 46650 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || || ||||| | ||| ||| || Sbjct 46651 -GACACAATCGACAACGTTAAGGCCAAGATTCAGGACAAGGAAGGAATTCCCC-GGACCA 46708 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || |||| || || || ||| ||||||||| || | || |||||||| Sbjct 46709 GCAACGTCTGATTTTCGCTGGAAAGCAGTTGGAGGACGGTCGCACCCTTGCTGACTACAA 46768 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 |||||| |||||||| || ||||| ||||| || | || |||||| Sbjct 46769 CATTCAGAAGGAGTCGACTCTGCACTTGGTGCTGCGTTT--GAGGGG 46813 >seq3427 Length=45480 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||| || || | ||||| || ||||| || |||| ||| | Sbjct 42735 AATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTTGAGAGTTC 42676 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || ||||| ||||| ||||| | || || || Sbjct 42675 TGATACCATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCA 42616 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| | ||| ||||| || || ||||| | | || |||| || ||||| Sbjct 42615 GCAGAGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGAAGGACTTTGGCTGATTACAA 42556 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| |||||||| || Sbjct 42555 CATTCAGAAGGAGTCCAC 42538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398822790834790