Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3427 147 2e-30 seq2770 140 2e-28 >seq3427 Length=45480 Score = 147 bits (162), Expect = 2e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||||||||||||| | ||||| || || || || ||||| || ||||| || Sbjct 42735 TCCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGC 42794 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | ||| || |||||| | ||||| || || ||||| || || Sbjct 42795 CAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGGG 42854 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||| |||||||| | || || ||| | |||| || |||||| || || Sbjct 42855 AATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCCAC 42914 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 |||||||| || || || |||||||||||||| ||||| || ||||| | ||| Sbjct 42915 CTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCATCTAAAA 42968 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||||| ||| | ||||| || || || || || ||||| ||||| ||| Sbjct 42053 CCACCCCTCAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCA 42112 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| |||||||| || || || | || | ||||||||| || || || Sbjct 42113 AGTGTCCTTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGG 42172 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || |||||| | || ||| | |||| || || || |||||| Sbjct 42173 ATGCCCTCTTTGTCCTG-AATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTAC 42231 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || ||||||||||| || ||||| |||||||| Sbjct 42232 CTCCAAAGTGATGGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || ||||| |||||||| ||||| || | || | | Sbjct 41836 ACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACC 41895 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||| |||||| | ||||| || ||||| || || || ||||||||||| Sbjct 41896 ATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTT 41955 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||| | || ||| | |||| || || ||| || || || | ||||| Sbjct 41956 GTCCTG-AATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTA 42014 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || ||||| |||||||| |||||||| Sbjct 42015 TGGTCTTTCCGGTCAAGGTCTTAACAAAGATCTGCAT 42051 Score = 125 bits (138), Expect = 6e-24 Identities = 167/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| |||||||||||||||||| || || || ||||| ||||| ||||| || Sbjct 42281 CCACCCCTCAGACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCT 42340 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || || ||| | || | ||||||||| || || || Sbjct 42341 AAAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGG 42400 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| |||||| | || ||| | || | || || || |||||| Sbjct 42401 ATTCCTTCCTTGTCTTG-AATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTAC 42459 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || | ||| || |||||||| ||||| Sbjct 42460 CTCAAG-GTAATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 >seq2770 Length=58540 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| |||||||| || || || || || || || ||||| ||||| ||| Sbjct 46589 CCTCCACGGAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCA 46530 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || ||||||||||| || ||| | || | | |||||||| || ||| Sbjct 46529 AGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGA 46470 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | ||| ||||| | || | |||||||| ||| ||| Sbjct 46469 ATTCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACT 46410 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| ||||| |||||||| |||||||| Sbjct 46409 TCAAGAGTAATTGTCTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 |||||||||||||| |||||||| || |||||||| ||||| || | ||| || || Sbjct 45890 AGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCC 45831 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || || ||| | ||||| || ||||||||||| |||||||| || || || Sbjct 45830 TCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCC 45771 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||||| | || | |||||||| || || || || || || || Sbjct 45770 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTC 45711 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 ||||| |||| ||||| || || |||||||| || || Sbjct 45710 TTGCCGGTTAGAGTTTTTACGAAGATCTGCATATTCAA 45673 Score = 113 bits (124), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||||||||||||||||||| || || || || || || |||||||| || || ||| Sbjct 46816 CCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCA 46757 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| || || | || || ||||| | |||| | |||||| ||||| ||| Sbjct 46756 AGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GGA 46698 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || ||| || | || || | || | ||||| || || || Sbjct 46697 ATTCCTTCCTTGTCCTG-AATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCAC 46639 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || | ||| || ||||| |||||||| Sbjct 46638 CTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385167040116510