Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq10062 91.5 5e-14 seq10040 91.5 5e-14 seq9889 91.5 5e-14 seq9148 91.5 5e-14 seq8287 91.5 5e-14 seq7459 91.5 5e-14 seq7236 91.5 5e-14 seq5248 91.5 5e-14 seq5122 91.5 5e-14 seq4783 91.5 5e-14 seq3481 91.5 5e-14 seq10740 87.8 7e-13 >seq10062 Length=4209 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 3391 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 3332 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 3331 TGCTCTACCCCGC 3319 >seq10040 Length=4311 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 3649 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 3708 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 3709 TGCTCTACCCCGC 3721 >seq9889 Length=4767 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 2195 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 2136 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 2135 TGCTCTACCCCGC 2123 >seq9148 Length=7006 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 3755 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 3696 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 3695 TGCTCTACCCCGC 3683 >seq8287 Length=9752 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 3171 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 3230 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 3231 TGCTCTACCCCGC 3243 >seq7459 Length=12565 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 1632 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 1573 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 1572 TGCTCTACCCCGC 1560 >seq7236 Length=13486 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 12246 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 12187 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 12186 TGCTCTACCCCGC 12174 >seq5248 Length=24148 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 23228 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 23169 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 23168 TGCTCTACCCCGC 23156 >seq5122 Length=25197 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 21064 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 21123 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 21124 TGCTCTACCCCGC 21136 >seq4783 Length=28273 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 10503 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 10562 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 10563 TGCTCTACCCCGC 10575 >seq3481 Length=44433 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 35952 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 35893 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 35892 TGCTCTACCCCGC 35880 >seq10740 Length=2170 Score = 87.8 bits (96), Expect = 7e-13 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 1986 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 2045 Query 50171 TGCTCTACTCC 50181 |||||||| || Sbjct 2046 TGCTCTACCCC 2056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181579240862820