Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2770 93.3 4e-14 seq3427 89.7 5e-13 >seq2770 Length=58540 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | || || || | || || || || || |||||||||||| Sbjct 46590 GCCTCCACGGAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGC 46531 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | ||| ||||||||||| || ||| |||| ||||| |||||||| || || Sbjct 46530 AAGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGG 46471 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || || || ||||| || | | || | |||||| | | ||| || Sbjct 46470 AATTCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAAC 46411 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| ||| | ||||| || ||||| || || || || || |||||| Sbjct 46410 TTCAAGAGTAATTGTCTTACCAGTCAAGGTCTTAACAAAGATCTGCATA 46362 >seq3427 Length=45480 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 137196 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCG 137254 ||||| || ||||||| || || || ||||| ||||||||||| ||| | || || Sbjct 42292 ACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCT-AAAGTCCTGC 42350 Query 137255 AGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 137314 ||||| | ||| ||||| ||| |||| || | |||||| || || || || ||||| | Sbjct 42351 CATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCT 42410 Query 137315 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCA 137374 |||| |||||| |||| | || | || || | | |||||| |||| || | Sbjct 42411 TGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCTCAA-GGTAA 42469 Query 137375 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| || || | || || || |||||||||||| Sbjct 42470 TGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATA 42507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 137196 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 137255 |||||| || | |||| ||||| || || || ||||||||||| | ||| || Sbjct 42064 ACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGTGTCCTTCC 42123 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 || |||||||| ||||| || |||| || | |||||| || || || ||||| ||||| Sbjct 42124 ATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATGCCCTCTTT 42183 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| |||||| |||| | || | || || | | |||||| || | ||| | Sbjct 42184 GTCCTGAATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACCTCCAAAGTGAT 42243 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || || || || || || || || ||||| Sbjct 42244 GGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488476153452000