Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3427 163 6e-35 seq2770 158 2e-33 >seq3427 Length=45480 Score = 163 bits (180), Expect = 6e-35 Identities = 173/227 (76%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || || || || || || || || || || || ||||||| | Sbjct 42281 CCACCCCTCAGACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCT 42340 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || ||||| | ||| || || |||||||| |||||||| || ||||| || Sbjct 42341 AAAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGG 42400 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| |||||||| || || |||||||| ||||| ||||| |||||| Sbjct 42401 ATTCCTTCCTTGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTACC 42460 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| || || ||||| ||||| | ||||| |||||||| ||||| Sbjct 42461 T-CAAGGTAATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| |||||||| |||||||| || || ||||||| | | | ||||| Sbjct 41836 ACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACC 41895 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||||| |||||||| || | || || || ||||| || || || || || Sbjct 41896 ATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTT 41955 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || ||||| || || |||||||| || || ||||| | || || ||||||||||| Sbjct 41956 GTCCTGAATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTAT 42015 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| ||||| |||||||| Sbjct 42016 GGTCTTTCCGGTCAAGGTCTTAACAAAGATCTGCAT 42051 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || || || || || ||||| || || ||||||| Sbjct 42506 TACCGCCACGAAGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAG 42565 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | || || || || ||||| || || |||||||| ||||| || || ||||| | Sbjct 42566 CCAAAGTCCTTCCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTG 42625 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || ||||| ||||| |||||| | || | Sbjct 42626 GGATACCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAA 42685 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | ||| || ||||| ||||| | ||||| |||||||| |||||| Sbjct 42686 CCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATT 42735 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || ||||||||||| || | ||| || || || || ||||| ||||| ||||||| Sbjct 42736 CCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCC 42795 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || ||||| | ||| || |||||||| || | || ||||||||||| || Sbjct 42796 AAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGGGA 42855 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || ||||| || || |||||| | || || Sbjct 42856 ATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCCACC 42915 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || || || || ||||| || ||||| Sbjct 42916 TCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 >seq2770 Length=58540 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || ||||| ||||| || || ||||| || || ||||| | Sbjct 46589 CCTCCACGGAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCA 46530 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || ||||||||||| ||||||||||| | || |||||||| || Sbjct 46529 AGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGA 46470 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| |||||||| || || || || || || || || ||||| ||| | ||| ||| Sbjct 46469 ATTCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACT 46410 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 46409 TCAAGAGTAATTGTCTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 Score = 138 bits (152), Expect = 2e-27 Identities = 171/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || ||||||||||| || ||||||||||| || || ||||| || || || |||| Sbjct 46818 TACCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAG 46759 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||| || | || |||||||| || || || | ||| || || || | Sbjct 46758 CAAGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-G 46700 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | ||||||||||| || |||||||| || || || || || || || || | || | || Sbjct 46699 GAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTC-TGAGCTCTCC 46641 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || |||||||| || || | ||||| ||||| |||||||| Sbjct 46640 ACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || || ||||| ||||| || || ||||| | ||| | | ||||| Sbjct 46346 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGTCC 46287 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| ||||| || ||||| ||||| || || || || || || ||||| || || Sbjct 46286 TCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCC 46227 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||||||||| || || || || || || || ||| || || | || |||||| Sbjct 46226 TGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTC 46167 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| ||||| || || |||||||| Sbjct 46166 TTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 107 bits (118), Expect = 4e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || || || ||||| ||||| || || ||||| | || ||| ||||| Sbjct 45890 AGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCC 45831 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || || |||||||| | || || ||||| || || || ||||||||||| Sbjct 45830 TCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCC 45771 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGT 82777 || ||||| || || || || || || || ||| || | || || || | || || || Sbjct 45770 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCA-GAGCTCTCGACCTCGAGGGTGATGGT 45712 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || | || ||||| || |||||||| Sbjct 45711 CTTGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981687439966290