Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2770 123 2e-23 seq2223 102 8e-17 >seq2770 Length=58540 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||||| || ||||| || ||||||||| | | || |||||| ||| Sbjct 45884 AAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCCTCAAGC 45825 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || | || |||||| || || || || |||||||| || |||| Sbjct 45824 TGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCCTGGATC 45765 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | | ||| || |||| ||||| ||| |||||| Sbjct 45764 TTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCG 45705 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||||||||| |||||||| Sbjct 45704 GTTAGAGTTTTTACGAAGATCTGCAT 45679 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | | || ||| | ||||| | ||||| | Sbjct 47015 GGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCA-TCCTCCAATTGCTTCC 46957 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | ||||| ||||||||||| |||||||||||||||||||| ||| || || Sbjct 46956 CCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCCT 46897 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | | |||||| || | |||| ||||||||| || || | Sbjct 46896 TGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGG 46837 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 46836 TCTTCACGAAGATTTGCAT 46818 Score = 102 bits (112), Expect = 8e-17 Identities = 146/202 (72%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | | ||| ||| |||||| | |||||| || Sbjct 46786 GTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACC-GTCCTCCAACTGCTTTCC 46728 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || || |||||||| || || || ||||||||||| ||||| ||| Sbjct 46727 AGCGAAAATCAGACGTTGCTGGTCCGG-GGAATTCCTTCCTTGTCCTGAATCTTGGCCTT 46669 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | | |||||| |||| ||||| || || ||||| || || Sbjct 46668 AACGTTGTCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGT 46609 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || || |||||||||||| || Sbjct 46608 CTTGACAAAAATCTGCATGCCT 46587 >seq2223 Length=74567 Score = 102 bits (112), Expect = 8e-17 Identities = 144/199 (72%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| || || || ||||||||| | | || || || ||||| |||||||| | Sbjct 64262 GTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCG--TCCTCTAGCTGCTTTC 64205 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| || |||||||| || || |||||||||||||| |||||| || Sbjct 64204 CGGCGAAGATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCCTTGTCCTGGATCTTAGCCT 64146 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | ||| || || | ||| | || || || || || | Sbjct 64145 TGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGGG 64086 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 64085 TTTTCACGAAGATCTGCAT 64067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483353664936400