Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1470 87.8 4e-12 >seq1470 Length=109422 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 167202 AATATTTCAAAAGAGCACCTAAA---ATCTTTATTAATTATCATTACACCACCAGCATTA 167258 ||||||| ||||||||| | || ||| | | | |||||| | ||| |||||| Sbjct 15837 AATATTTGGAAAGAGCACATCAATGAATCATCTACACTCATCATTGCCCCA---GCATTA 15781 Query 167259 TCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAA 167317 |||||||| | | || ||||||||||||||||||| ||| || | || || ||| ||| Sbjct 15780 TCGAATTC-TCCACAGTAATTTGGTGCTGAAAATATAGTTACAAGTTGTCGGTTGGCAAA 15722 Query 167318 TAATTCATAACCATCTTCAACAAC 167341 |||||||| ||||| || ||||| Sbjct 15721 GAATTCATAGCCATCCTCCACAAC 15698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186643860906710