Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2770 116 2e-21 seq3427 98.7 7e-16 seq2223 93.3 3e-14 >seq2770 Length=58540 Score = 116 bits (128), Expect = 2e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || ||||| ||| || || ||||||||||||| || || || | Sbjct 46578 ACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCC 46519 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | ||||||||||||||| || | ||||||||||||| | || | || || || Sbjct 46518 GTCCTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTT 46459 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || ||||| | | || | ||| | ||||| |||||| || |||| || | Sbjct 46458 ATCCTGGATTTT-GGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAA 46400 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || ||||| || || || || ||||||||||||||| Sbjct 46399 TTGTCTTACCAGTCAAGGTCTTAACAAAGATCTGCATA 46362 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| || || || ||||||||||||| || || ||| |||| || Sbjct 46344 CACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGTCCTC 46285 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||| |||||||| || |||| | |||||| || | || | ||||||||||| Sbjct 46284 AAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCCTG 46225 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || || || | ||| | ||||||| ||||| || || | |||||||| | Sbjct 46224 GATCTT-TGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCT 46166 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || |||||||||||| Sbjct 46165 TTCCAGTCAAAGTCTTAACGAAGATCTGCATA 46134 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| || || || ||||||||||||| ||| || ||| |||| || Sbjct 46116 CACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGTCCGTCCTC 46057 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||| |||||||| || |||| | |||||| ||| | || | ||||||||||| Sbjct 46056 AAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCCTG 45997 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || | || || | ||| | ||||||| ||||| || || | ||||| || | Sbjct 45996 GATCTT-AGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATAGTCT 45938 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| || || || ||||||||||| Sbjct 45937 TCCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 98.7 bits (108), Expect = 7e-16 Identities = 155/218 (71%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 || ||||||||| || ||| || || || ||||||||||||| ||| || ||| |||| Sbjct 45891 TAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTC 45832 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || | || || |||||||| ||||| | ||||||||| | || | |||||| || || Sbjct 45831 CTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATC 45772 Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGA 33712 || || | | || | ||| | |||||| ||| || || || | |||| Sbjct 45771 CTGGATCTT-AGCCTTGACGTTGTCGATGGTGTCAGAGCT---CTCGACCTCGAGGGTGA 45716 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || |||| |||||||| |||||||||||| Sbjct 45715 TGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCATA 45678 >seq3427 Length=45480 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| | ||| | || || || ||| || || || |||||||| | Sbjct 42736 CCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCC 42795 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | | || |||||||| || || ||||||||||| | ||| |||||| | || Sbjct 42796 AAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGGGA 42855 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | ||||| ||| | ||| || ||||| Sbjct 42856 ATCCCCTCCTTGTCTTGGATCTT-AGCCTTAACATTGTCTATGGTATCAGAACTCTCCAC 42914 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| ||||| ||||| |||||||| ||||| Sbjct 42915 CTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| |||||| || ||||||||||| | | || | | || ||||| ||| Sbjct 41849 TGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGT 41908 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||||||||| | |||||| ||| | || | ||| |||||||| ||||||| Sbjct 41909 TTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTTTC 41968 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | |||| ||| | ||| || ||||| || | || || || || || || Sbjct 41969 -GCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGT 42027 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || || || |||||||||||||| Sbjct 42028 CAAGGTCTTAACAAAGATCTGCAT 42051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| ||||| | || ||||| ||| || || ||||||||||| | Sbjct 42053 CCACCCCTCAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCA 42112 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || | ||| || ||||| || || | | ||||| ||| | || Sbjct 42113 AGTGTCCTTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGG 42172 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || |||||||| ||||||| | | |||| ||| | || || ||| ||| Sbjct 42173 ATGCCCTCTTTGTCCTGAATTTTC-GCCTTTACATTGTCTATTGTATCCGAGCT---TTC 42228 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || ||||| || || |||||||||||||| Sbjct 42229 TACCTCCAAAGTGATGGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/232 (69%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | ||||||||| || || ||| ||||| ||||||||||| | Sbjct 42281 CCACCCCTCAGACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCT 42340 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | || |||||||| || |||||||| || | | ||||| ||| | || Sbjct 42341 AAAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGG 42400 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| ||||| ||||||| | | |||| ||| | || || ||| ||| Sbjct 42401 ATTCCTTCCTTGTCTTGAATTTTC-GCCTTTACATTGTCAATTGTATCCGAGCT---TTC 42456 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || |||| || || || || ||||| | || || ||||| || |||||| Sbjct 42457 TACCTCAA-GGTAATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATA 42507 >seq2223 Length=74567 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || ||||| ||| ||||| ||||||||||||| || || || |||| || Sbjct 64275 CACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTC 64216 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || |||||||| || || | ||| ||||| ||| | || | ||||| ||||| Sbjct 64215 TAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCCTTGTCCTG 64157 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || | | |||| ||| | |||||| || || || || | || || || | Sbjct 64156 GATCTT-AGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATAGTCT 64098 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 | ||||||| ||||| || ||||||||||| ||| Sbjct 64097 TCCCTGTTAGGGTTTTCACGAAGATCTGCATTGTT 64063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328659492451200