Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3427 149 1e-30 seq2770 120 7e-22 seq2223 100 7e-16 >seq3427 Length=45480 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || ||||| || ||||||||||| || ||||| || || Sbjct 42276 CAGATCTTTGTGAAGACCTTAACTGGAAAGACCATCACTTTGGAGGTAGAAAGCTCGGAT 42217 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || |||||| || ||||| || ||||| || || || ||| ||| Sbjct 42216 ACAATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCACCAGACCAGCAA 42157 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||||||||| ||||| | || ||||||||||| | || ||||||||| || Sbjct 42156 AGACTTATCTTCGCCGGTAAGCAACTCGAGGATGGAAGGACACTTGCAGATTACAACATC 42097 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 ||||| ||||||||||||||||| || ||| Sbjct 42096 CAGAAGGAGTCTACTCTTCACCTCGTGTTG 42067 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || ||||| || || |||||||| ||||| ||||| || Sbjct 42048 CAGATCTTTGTTAAGACCTTGACCGGAAAGACCATAACTTTGGAGGTGGAGAGTTCGGAT 41989 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| || ||||| || ||||| || || || ||| || Sbjct 41988 ACCATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATCCCACCAGACCAGCAG 41929 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || || || |||||||||||||| ||||||||||| ||||||||| | Sbjct 41928 AGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTAGGACTTTGGCTGATTACAACATT 41869 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||||||||||||||||| | | ||||| Sbjct 41868 CAGAAAGAGTCTACTCTTCACCTTGTTCTCCGTCTTCG 41831 Score = 141 bits (156), Expect = 2e-28 Identities = 152/200 (76%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || || |||||||| || || || ||| | || ||||| || || Sbjct 42503 CAAATATTTGTGAAGACCCTTACAGGAAAGACCATTACCTTG-AGGTAGAAAGCTCGGAT 42445 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || |||||| || |||||||| || |||||||| || ||| ||| Sbjct 42444 ACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 42385 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||| ||||| ||||| ||||||||||| |||||||| || ||||||||| || Sbjct 42384 AGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAACATC 42325 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || ||||| || ||||| Sbjct 42324 CAAAAGGAGTCGACCCTTCA 42305 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || || |||||||| || |||||| | || || || |||||||| Sbjct 42731 CAAATATTTGTGAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTTGAGAGTTCTGAT 42672 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || ||||| || || ||| || Sbjct 42671 ACCATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAGCAG 42612 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||| ||||| ||||| | || ||||||||||||||||| ||||||||| | Sbjct 42611 AGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGAAGGACTTTGGCTGATTACAACATT 42552 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| || || Sbjct 42551 CAGAAGGAGTCCACACTTCATCTCGT 42526 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || |||||| | || ||||| |||||||| || | || Sbjct 42947 AAAACCTTAACTGGTAAGACCATCACTCTTGAGGTGGAGAGTTCTGATACCATAGACAAT 42888 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || ||| || || || || | || || Sbjct 42887 GTTAAGGCTAAGATCCAAGACAAGGAGGGGATTCCCCCAGATCAACAGAGGTTGATTTTT 42828 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||||||||||||||| |||||||| | ||||| ||||| Sbjct 42827 GCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAATATTCAGAAGGAGTCA 42768 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 42767 ACCCTTCACCTCGT 42754 Score = 95.1 bits (104), Expect = 3e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||||||||||||||||||||||||||| | || || |||||||||||| Sbjct 41831 CGAAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTC 41890 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 || |||||||||| ||| || || || || || Sbjct 41891 CTACCATCTTCCAACTGTTTACCAGCAAAAAT 41922 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 ||| || ||||||||||||||||| ||||||| || || || || | ||||||||||| Sbjct 42067 CAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGTGTCCTTCCATC 42126 Query 204820 TTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 || || ||||| |||||||||||||| | ||| || Sbjct 42127 CTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTG 42162 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || |||||||| || ||||| ||||| | ||| || |||||||||||||||||||||||| Sbjct 42754 ACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCC 42813 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| || || || || | || |||||| Sbjct 42814 AATTGCTTCCCAGCAAAAATCAACCTCTGTTGA 42846 >seq2770 Length=58540 Score = 120 bits (132), Expect = 7e-22 Identities = 148/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || |||||||| | || ||||| || || ||| Sbjct 46594 CAGATTTTTGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGAGCTCAGAC 46653 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| |||||||| || || ||||||||| |||||| ||| Sbjct 46654 ACAATCGACAACGTTAAGGCCAAGATTCAGGACAAGGAAGGAATTCC-CCGGACCAGCAA 46712 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| |||||||||||||| || || | || | || || |||||| | Sbjct 46713 CGTCTGATTTTCGCTGGAAAGCAGTTGGAGGACGGTCGCACCCTTGCTGACTACAACATT 46772 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||| ||| Sbjct 46773 CAGAAGGAGTCGACTCTGCAC 46793 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||||||||| ||||| || ||||||||| | || Sbjct 46833 AAGACCCTTACGGGCAAAACCATCACTTTGGAGGTGGAGAGCTCTGACACAATTGACAAT 46892 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||| || || ||| || | || ||||| Sbjct 46893 GTCAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCAGACCAGCAGCGTCTCATCTTT 46952 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||| ||||| | ||| | || ||||||||| | ||||| |||||| Sbjct 46953 GCGGGGAAGCAATTGGAGGATGGTCGTACTCTTGCTGATTACAACATTCAGAAGGAGTCT 47012 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||| | | ||||| Sbjct 47013 ACCCTCCACCTTGTTCTTCGTCTTCG 47038 Score = 113 bits (124), Expect = 1e-19 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || ||||| |||||||| | || || ||| ||| ||||| |||| || |||||| Sbjct 46159 ACTGGAAAGACGATCACCCTCGAGGTCGAATCTTCCGACACCATCGACAACGTCAAAGCA 46218 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| || || |||||||| || |||||| || ||||| |||||||||||||| Sbjct 46219 AA-GATCCAGGACAAAGAAGGGATCCCCCCGGACCAGCAGAGACTGATCTTCGCCGGAAA 46277 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| | || || ||| | ||| | |||||||||||| ||||||| || || || || || Sbjct 46278 GCAACTTGAGGACGGACGTACTCTTGCCGATTACAACATCCAGAAGGAATCCACCCTCCA 46337 Query 206373 C 206373 | Sbjct 46338 C 46338 Score = 93.3 bits (102), Expect = 1e-13 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || || ||| ||| ||||| |||| Sbjct 45922 AAGACTCTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCCGACACCATCGACAAC 45981 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || |||||||| || || ||| || || || ||||| Sbjct 45982 GTCAAAGCTAA-GATCCAGGACAAAGAAGGGATCCCCCCAGACCAGCAGAGGCTGATCTT 46040 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||| | || || ||| | ||| | |||||||||||| ||||||| || || Sbjct 46041 CGCCGGAAAGCAACTTGAGGACGGACGTACTCTCGCCGATTACAACATCCAGAAGGAATC 46100 Query 206364 TACTCTTCAC 206373 || || ||| Sbjct 46101 CACACTCCAC 46110 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || || || |||||||| |||| Sbjct 45694 AAAACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCTGACACCATCGACAAC 45753 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| ||||| || || | ||||| Sbjct 45754 GTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCGGATCAGCAGAGGTTGATCTTT 45813 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || ||| | || | |||||||||||| | ||||| || || Sbjct 45814 GCCGGGAAGCAGCTTGAGGACGGACGAACCCTCGCCGATTACAACATTCAGAAGGAATCC 45873 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 45874 ACCCTTCA 45881 >seq2223 Length=74567 Score = 100 bits (110), Expect = 7e-16 Identities = 147/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || || || | || || || ||||||||| |||| Sbjct 64082 AAAACCCTAACAGGGAAGACTATAACCCTAGAGGTTGAGTCTTCTGACACCATCGACAAT 64141 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| ||| | || |||||| Sbjct 64142 GTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCA-CCAGACCAGCAACGTCTCATCTTC 64200 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || || || | || | |||||||||||| |||| || ||||| Sbjct 64201 GCCGGAAAGCAGCTAGAGGACGGCCGAACCCTAGCCGATTACAACATCCAAAAGGAGTCG 64260 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| | || | |||||| || Sbjct 64261 ACTCTTCACTTGGTGCTCAGACTTAGA 64287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181652571502310