Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2770 131 2e-25 seq2223 102 7e-17 seq3427 96.9 3e-15 >seq2770 Length=58540 Score = 131 bits (144), Expect = 2e-25 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | ||||||||| | || ||||| ||||||||||||||||| Sbjct 45905 CCACCACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCG 45846 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| |||| || |||||||| || ||||| ||||||| |||||| |||| ||| Sbjct 45845 AGGGTTCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGA 45786 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||| ||| |||||| ||| | |||| | | ||||| |||| || Sbjct 45785 ATACCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---TC 45730 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | |||||| || || |||||||| Sbjct 45729 GACCTCGAGGGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | |||||| || | || ||||| || |||||||||||||| Sbjct 46361 CCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCA 46302 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || ||||| || || || |||| | ||||||||||| || Sbjct 46301 AGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGG 46242 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | || |||||| |||| ||||||| |||| | | |||||| ||||| || Sbjct 46241 ATCCCTTCTTTGTCCTGGATC-TTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGAC 46183 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||||| || || |||||||| || || || |||||||| Sbjct 46182 CTCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | |||||| || | || ||||| || |||||||||||||| Sbjct 46133 CCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCG 46074 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || ||||| || || || |||| || ||||||||| | || Sbjct 46073 AGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46014 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | || |||||| |||| || |||| |||| | | |||||| ||||| || Sbjct 46013 ATCCCTTCTTTGTCCTGGATC-TTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGAC 45955 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || || | ||| || || || |||||||| Sbjct 45954 CTCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 100 bits (110), Expect = 3e-16 Identities = 164/231 (71%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || | || |||||| || | || |||||| ||||||||||| || || Sbjct 46816 CCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCA 46757 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| |||| |||||| || || || |||| || |||||||||| ||| Sbjct 46756 AGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCG-GGGA 46698 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||||||| ||| || || | | |||| | | ||||| |||| || Sbjct 46697 ATTCCTTCCTTGTCC-TGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTC---TC 46642 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | |||||||| || || || | || || ||||| |||||||| Sbjct 46641 CACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | || || | || |||| ||||| |||||||| Sbjct 47009 CTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTCCAATTGCTTCCCCGCAAA 46950 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || |||||||| ||| || ||| | | | Sbjct 46949 GATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCCTTGACATT 46890 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| |||||||||| ||||| ||||| ||||| | || || Sbjct 46889 GTCAATTGTGTCAGAGCTC---TCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTT 46833 Query 35722 CACAAATATCTGCAT 35736 ||| || || ||||| Sbjct 46832 CACGAAGATTTGCAT 46818 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||| || |||||||||||||| | ||| || |||| || Sbjct 46572 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTC 46513 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || || || || ||||| || | |||||||| || | |||| | |||||| ||| Sbjct 46512 GAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 46453 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||| ||| || | |||| | | |||||| ||||| || || | || || || | Sbjct 46452 GAT-TTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCT 46394 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || ||||| |||||||| Sbjct 46393 TACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 >seq2223 Length=74567 Score = 102 bits (112), Expect = 7e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || ||||||||| |||||||||||||| | |||||| |||| || Sbjct 64275 CACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTC 64216 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || || || || | || |||||||| | || | || ||||||||| Sbjct 64215 TAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCCTTGTCCTG 64157 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | | ||||| || || ||||| | || || || || Sbjct 64156 GATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATAGTCTT 64097 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || || | |||||||| || ||||||||| Sbjct 64096 CCCTGTTAGGGTTTTCACGAAGATCTGCATT 64066 >seq3427 Length=45480 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| |||||||| ||||| || | | || |||| ||||| || ||||| Sbjct 42771 CTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAA 42830 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||| || || | |||| | ||||||||| |||||| ||| | | | Sbjct 42831 AATCAACCTCTGTTGATCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATT 42890 Query 35665 TGCCACCGTGTCG---CTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | || || ||| |||||||| | ||||| || ||||| || || ||||| Sbjct 42891 GTCTATGGTATCAGAACTC---TCCACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTT 42947 Query 35722 CACAAATATCTGCAT 35736 |||||| || ||||| Sbjct 42948 CACAAAGATTTGCAT 42962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| ||||| || | | || |||| ||| ||||| ||||| Sbjct 41860 CTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGTTTACCAGCAAA 41919 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 ||||||| ||||||||| | || | | ||| |||||| ||| ||| | ||| | | Sbjct 41920 AATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCC-TGAATTTTCGCCTTTACAT 41978 Query 35664 TTGCCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | || || ||| |||||||||| || || || || || ||||| || | Sbjct 41979 TGTCTATGGTATC---CGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGTCAAGGTCT 42035 Query 35721 TCACAAATATCTGCAT 35736 | ||||| |||||||| Sbjct 42036 TAACAAAGATCTGCAT 42051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450730996038800