Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2770 134 1e-26 seq3427 105 7e-18 >seq2770 Length=58540 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||| | ||| || || || ||||| || |||||||| ||| || Sbjct 46589 CCTCCACGGAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCA 46530 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| ||||| ||||| || ||||| || | |||||||||||| || || Sbjct 46529 AGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGA 46470 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || ||||| ||||| ||| | ||||| || ||||| || Sbjct 46469 ATTCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACT 46410 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| || ||||| || || || ||||| || || ||||| Sbjct 46409 TCAAGAGTAATTGTCTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| || ||||||||||| || |||||||| ||| ||| || | ||| || Sbjct 46344 CACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGTCCTC 46285 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 || || || || || || |||| | |||||| || || || || |||||||| || || Sbjct 46284 AAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCCTG 46225 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || ||| |||||| ||| | |||||||| ||||| || ||||| || || || || Sbjct 46224 GATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTT 46165 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| |||||||| || ||||| Sbjct 46164 TCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||||||||| ||||||||||| ||| | | ||| | ||| || ||||| Sbjct 45881 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCCTCAAGCTGC 45822 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| | ||||||||| || || || ||||| || || || || || Sbjct 45821 TTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCCTGGATCTTA 45762 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| ||| | ||||| || || || ||||| || ||||| || |||||| Sbjct 45761 GCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTT 45702 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 | |||||| ||||| || ||||| || Sbjct 45701 AGAGTTTTTACGAAGATCTGCATATT 45676 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| || ||||||||||| || |||||||| ||| | | || | ||| || Sbjct 46116 CACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGTCCGTCCTC 46057 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 || || || || || || |||| | |||||| || || || || |||||||| || || Sbjct 46056 AAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCCTG 45997 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || |||||| ||| | |||||||| ||||| || ||||| || || || || Sbjct 45996 GATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATAGTCTT 45937 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||| ||| |||||||| || ||||| Sbjct 45936 CCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 114 bits (126), Expect = 1e-20 Identities = 155/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||| | ||| || || || ||||| |||||||||||||| ||| |||| || | Sbjct 46804 CGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCG 46745 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||| || || || ||||||| ||| ||||| || || || || ||||| || Sbjct 46744 TCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GGAATTCCTTCCTTG 46686 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || ||||| || || || ||| | |||||| || ||||| ||||| || || Sbjct 46685 TCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATC 46626 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| | || || || ||||| ||||| Sbjct 46625 GTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| ||||||||||| || ||| || || || || Sbjct 47026 ACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTCC 46967 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | || || || ||||| || | ||||||||| || || || |||||||| || ||||| Sbjct 46966 AATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGG 46907 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| ||||| ||| | |||||| || ||||| || | ||| |||||||| Sbjct 46906 ATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTG 46847 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| |||||||| Sbjct 46846 CCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 >seq3427 Length=45480 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| || || | |||| ||||||||| || || || ||||| ||||| ||||| || | Sbjct 42734 TTCCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAG 42793 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 |||| | | | || || | || || || ||||||||||| | ||| ||||| || Sbjct 42794 CCAAAGTCCTTCCA-TCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGG 42852 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || ||||| || || || || ||| | || || || ||| Sbjct 42853 GGAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCC 42912 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 42913 ACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || ||||| || || || || || ||||||||||| || ||||| | | | || || Sbjct 41843 ACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCA-TCTTC 41901 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | |||||| || ||||||||||| | |||||| || || || || || ||||| || || Sbjct 41902 CAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTG 41961 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 |||||| || || ||| | || || || ||||| || | ||| ||||| || Sbjct 41962 AATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTT 42021 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||| || || ||||| Sbjct 42022 TCCGGTCAAGGTCTTAACAAAGATCTGCAT 42051 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||||||||||||| || || || ||||| || |||||||| || || Sbjct 42053 CCACCCCTCAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCA 42112 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||||| || || || || || || | | ||||| || || || Sbjct 42113 AGTGTCCTTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGG 42172 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || |||||||| || || ||| | ||| || || ||| || Sbjct 42173 ATGCCCTCTTTGTCCTGAATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACC 42232 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| ||||| || || ||||| || || || || || ||||| Sbjct 42233 TCCAAAGTGATGGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || || | |||||| || || ||||| ||||| ||||||||||| || ||||| | | Sbjct 42517 AGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTT 42576 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || ||||| || || || ||||| || | | |||||| || || || || ||||| Sbjct 42577 CCA-TCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTC 42635 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| || || ||||| ||| | || || || || || |||||||| Sbjct 42636 CTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAACCTCGAGAGT 42695 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || || || | || || || || ||||||||| Sbjct 42696 GATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATT 42735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505328212797200