Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1439 95.1 2e-14 >seq1439 Length=111383 Score = 95.1 bits (104), Expect = 2e-14 Identities = 250/379 (66%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || || ||||| || || |||||||||||||| | Sbjct 101129 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 101188 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | || | || || |||||||| ||||| || || ||||| || Sbjct 101189 TCCAAGACCAGCCCCTCTCTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA 101248 Query 11659 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || || |||| | ||| | ||||| | ||| || || || ||||| || || | Sbjct 101249 -GGGTGCTTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCTGGACGCACCAACTCCCA 101307 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| |||||||| | || || | || || || || || | ||||| | Sbjct 101308 CAAACAATTCCACAAACTCTGAAGCTGCACATGAGAAAAACGGCACGCCGGCCTCACCAG 101367 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | | ||||| || | ||||||||||| ||||| || || | ||||| ||| Sbjct 101368 CCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGGTGGTCCAACAAGAAGACACCCTT 101427 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 |||||||| || ||| | || || | || || | ||| | ||||| || | | Sbjct 101428 TTGGGATCTTAGCTCCAAGTGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACCACTT 101487 Query 11898 CTTCAAGTTCATCTTTGGC 11916 ||| |||||| ||| || Sbjct 101488 CTTGCAGTTCAAGTTTTGC 101506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627944782056000