Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2770 176 5e-39 seq3427 172 6e-38 seq2223 158 1e-33 seq6102 84.2 2e-11 >seq2770 Length=58540 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || ||||| ||||||||||| ||||| ||| | Sbjct 46363 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAGACAATTACTCTTGAAGTTGAATCATCT 46422 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| ||||| ||||| |||||||||||||| ||||| ||| Sbjct 46423 GACACGATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAGGGAATTCCCCCAGATCAG 46482 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||||||||| ||||| || || ||||||||||| | |||||||| || || || || Sbjct 46483 CAGCGTCTAATCTTTGCCGGAAAACAACTCGAGGACGGCCGTACCCTTGCCGATTACAAC 46542 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || | || | ||||| || || || Sbjct 46543 ATCCAGAAGGAGTCGACTCTCCACTTGGTGCTTCGTCTCCGTGGAGG 46589 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||| ||||| || || ||| | ||||| ||| | Sbjct 46818 ATGCAAATCTTCGTGAAGACCCTTACGGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 46877 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||||||||| || |||||||| || || |||||||||||| Sbjct 46878 GACACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCAGACCAG 46937 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || |||||| | ||||||| |||||| || || || || || Sbjct 46938 CAGCGTCTCATCTTTGCGGGGAAGCAATTGGAGGATGGTCGTACTCTTGCTGATTACAAC 46997 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || || | |||||||| ||||| Sbjct 46998 ATTCAGAAGGAGTCTACCCTCCACCTTGTTCTTCGTCTTCGTGGTGG 47044 Score = 143 bits (158), Expect = 3e-29 Identities = 171/229 (75%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || ||||| ||||| || || || ||||| ||| || | Sbjct 46591 ATGCAGATTTTTGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAG--AGCT 46648 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || | || | ||||| || |||||||||||||| |||||||| || |||| Sbjct 46649 CAGACACAATCGACAACGTTAAGGCCAAGATTCAGGACAAGGAAGGAATTCC-CCGGACC 46707 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| ||||| ||||| ||||| ||||| | ||||| | ||| ||||| || ||||| | Sbjct 46708 AGCAACGTCTGATTTTCGCTGGAAAGCAGTTGGAGGACGGTCGCACCCTTGCTGACTACA 46767 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || ||||| || ||||| || | || ||||| | | ||||| Sbjct 46768 ACATTCAGAAGGAGTCGACTCTGCACTTGGTGCTGCGTTTGAGGGGTGG 46816 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||| |||||||| || || ||||| || || Sbjct 45907 ATGCAGATCTTCGTTAAGACTCTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCC 45966 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || ||||| || |||||||| || || || || ||||||||| Sbjct 45967 GACACCATCGACAACGTCAAAGCTAAGATCCAGGACAAAGAAGGGATCCCCCCAGACCAG 46026 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || |||||||| ||||| | ||||| || || || || || Sbjct 46027 CAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTCGCCGATTACAAC 46086 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||||||||| || || Sbjct 46087 ATCCAGAAGGAATCCACACTCCA 46109 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || ||||||||||| || || || ||||| ||| | Sbjct 45679 ATGCAGATCTTCGTAAAAACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 45738 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | |||||||| || ||||| ||||| || ||||| || || ||| Sbjct 45739 GACACCATCGACAACGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCGGATCAG 45798 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || ||||| || ||||| | || ||||| || || || || Sbjct 45799 CAGAGGTTGATCTTTGCCGGGAAGCAGCTTGAGGACGGACGAACCCTCGCCGATTACAAC 45858 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| |||||| | || | | || || ||||| Sbjct 45859 ATTCAGAAGGAATCCACCCTTCATTTGGTGCTAAGGCTCCGTGGTGG 45905 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| || || Sbjct 46135 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACGATCACCCTCGAGGTCGAATCTTCC 46194 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || || || || |||||||| || || || || || |||||| Sbjct 46195 GACACCATCGACAACGTCAAAGCAAAGATCCAGGACAAAGAAGGGATCCCCCCGGACCAG 46254 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || |||||||| ||||| | ||||| || || || || || Sbjct 46255 CAGAGACTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTTGCCGATTACAAC 46314 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||||||||| || || Sbjct 46315 ATCCAGAAGGAATCCACCCTCCA 46337 >seq3427 Length=45480 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||| || ||||| || ||||| ||||||||| Sbjct 42735 AATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTTGAGAGTTC 42676 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| | |||||||| || || || ||||| || || || |||||||| Sbjct 42675 TGATACCATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCA 42616 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| ||||||||||||||||||| | || | || || || || Sbjct 42615 GCAGAGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGAAGGACTTTGGCTGATTACAA 42556 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| |||||||| || | |||||||| || || Sbjct 42555 CATTCAGAAGGAGTCCACACTTCATCTCGTGCTTCGTCTTCGTGGCGG 42508 Score = 156 bits (172), Expect = 5e-33 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || ||||| || ||| | ||||| || || | Sbjct 42279 ATGCAGATCTTTGTGAAGACCTTAACTGGAAAGACCATCACTTTGGAGGTAGAA--AGCT 42222 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| || | ||| | ||||| |||||||||||||| ||||| || || ||||||| Sbjct 42221 CGGATACAATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCACCAGACC 42162 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| | || || || || ||||||||||||||||||| | || || ||||| || | Sbjct 42161 AGCAAAGACTTATCTTCGCCGGTAAGCAACTCGAGGATGGAAGGACACTTGCAGATTACA 42102 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| || |||||||| || || |||||||| | ||||| Sbjct 42101 ACATCCAGAAGGAGTCTACTCTTCACCTCGTGTTGCGTCTGAGGGGTGG 42053 Score = 156 bits (172), Expect = 5e-33 Identities = 174/229 (76%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || || | Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTAC-CTTGAGGTAGAA--AGCT 42450 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| |||| ||| | ||||| |||||||| |||||||| ||||| || ||||||| Sbjct 42449 CGGATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACC 42390 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| | || || ||||| ||||||||| | || |||| | || |||| || || | Sbjct 42389 AGCAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACA 42330 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||| || || |||||| | || ||||||| | ||||| Sbjct 42329 ACATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGCGTCTGAGGGGTGG 42281 Score = 141 bits (156), Expect = 1e-28 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||| ||||| || ||| | ||||| ||| || | Sbjct 42051 ATGCAGATCTTTGTTAAGACCTTGACCGGAAAGACCATAACTTTGGAGGTGGAG--AGTT 41994 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| ||| | ||| | ||||| |||||||||||||| ||||| || || ||||||| Sbjct 41993 CGGATACCATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATCCCACCAGACC 41934 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | | |||||||||||||| || | || |||| | | || | || || || | Sbjct 41933 AGCAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTAGGACTTTGGCTGATTACA 41874 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || || || |||||||| || || | |||||||| || || Sbjct 41873 ACATTCAGAAAGAGTCTACTCTTCACCTTGTTCTCCGTCTTCGTGGCGG 41825 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || | || || ||||| || ||||||||||| ||| | Sbjct 42962 ATGCAAATCTTTGTGAAAACCTTAACTGGTAAGACCATCACTCTTGAGGTGGAGAGTTCT 42903 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | |||||||| || || ||||||||||| ||||| ||||| || Sbjct 42902 GATACCATAGACAATGTTAAGGCTAAGATCCAAGACAAGGAGGGGATTCCCCCAGATCAA 42843 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||||||||| |||||| | || |||| | || | || || || ||| Sbjct 42842 CAGAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 42783 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || || ||||| || || ||||| | | |||||| Sbjct 42782 ATTCAGAAGGAGTCAACCCTTCACCTCGTGCTGCGTTTGAGGGGTGGA 42735 >seq2223 Length=74567 Score = 158 bits (174), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || || || || || |||||||| || || ||||||||||| Sbjct 64066 AATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACTATAACCCTAGAGGTTGAGTCTTC 64125 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | |||||||| || ||||||||||| || || || |||||||| Sbjct 64126 TGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCAT-CCACCAGACCA 64184 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || || || ||||| || ||||| | || |||||||| || || || Sbjct 64185 GCAACGTCTCATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGAACCCTAGCCGATTACAA 64244 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||||||||| || |||||||| Sbjct 64245 CATCCAAAAGGAGTCGACTCTTCA 64268 >seq6102 Length=18543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || || ||||| || || |||||||| ||||| | Sbjct 17028 ATGCAGATCTTCGTGAAAACCCTAACTGGGAAGACCATCACCCTTGAGGTCGAGTCTAGC 17087 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||| | ||| | |||||||| |||||||||||||| || Sbjct 17088 GATACCATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGG 17131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570231198143200