Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2770 123 2e-23 seq3427 105 4e-18 >seq2770 Length=58540 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | ||||| |||||| || ||||| |||||| |||||||| || || | | Sbjct 46816 CCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCA 46757 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | || || || || || || | ||| || |||||||| || Sbjct 46756 AGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GGA 46698 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | ||| |||||||| ||||| | |||||| | ||||||||| ||||||||| Sbjct 46697 ATTCCTTCCTTGTCCTGAATCTTG-GCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCAC 46639 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| ||||| || ||||| | || || ||||||||||||||| Sbjct 46638 CTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATG 46590 >seq3427 Length=45480 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||||||| | || ||||| |||||| || ||||| ||||||| Sbjct 42052 GCCACCCCTCAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGC 42111 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||| | | || || ||||| |||||||| || || | | || ||||| || || Sbjct 42112 AAGTGTCCTTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGG 42171 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||| ||||| ||| ||| | || || | ||||| || ||| || | Sbjct 42172 GATGCCCTCTTTGTC-CTGAATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTA 42230 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| || || || || || ||||| || |||||||| ||||||||| Sbjct 42231 CCTCCAAAGTGATGGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCATG 42280 Score = 98.7 bits (108), Expect = 6e-16 Identities = 165/231 (71%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG- 34537 ||| || || ||||||| ||||||||| || || ||||||||| ||||| ||||| | Sbjct 42280 GCCACCCCTCAGACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGC 42339 Query 34538 -AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 ||||| | || | ||||| | ||| ||||||||||| || | | || ||||| || Sbjct 42340 TAAAGTCCT-GC-CATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGT 42397 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTC 34655 || | ||| ||||||||| ||| ||| | || || | |||||| || ||| || Sbjct 42398 GGGATTCCTTCCTTGTCT-TGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTC 42456 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||| || || || || || | || |||||||| || ||||| Sbjct 42457 TACCT-CAAGGTAATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 Score = 91.5 bits (100), Expect = 9e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || || | ||||| ||| | || || || |||||| ||||| || ||||| | Sbjct 42736 CCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCC 42795 Query 34538 AAAGTG-TTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 ||||| ||| | ||||| | ||| || || ||||| || || | |||||| || || Sbjct 42796 AAAGTCCTTC---CATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGG 42852 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTC 34655 || | |||||||||||| |||| || | ||||| | || || || ||||| Sbjct 42853 GGAATCCCCTCCTTGTCTTGGATC-TTAGCCTTAACATTGTCTATGGTATCAGAACTCTC 42911 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || | || || || ||||| ||||| ||||||||||| || ||||| Sbjct 42912 CACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 ||||| | |||||| | ||| | ||| || ||| |||||| |||||||| ||||| | Sbjct 42508 CCGCCACGAAGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCC 42567 Query 34538 AAAGTG-TTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 ||||| ||| | || || ||||| ||||||||||| || | | ||| ||||| || Sbjct 42568 AAAGTCCTTC---CATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGT 42624 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTC 34655 || | || ||||| ||| |||| || | || || | ||| || || ||||| Sbjct 42625 GGGATACCTTCCTTATCTTGGATC-TTAGCCTTGACATTGTCAATGGTATCAGAACTCTC 42683 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || || || | || |||||||| || ||||| Sbjct 42684 AACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314686984628630