Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3427 86.0 4e-12 >seq3427 Length=45480 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||| || || ||||| |||| || |||||| | Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTACC-TTGAGGTAGAAAGCTCG 42448 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || ||||| ||||| ||||| | || || | Sbjct 42447 GATACAATTGACAAT--GTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACC 42390 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | || |||||||| || |||||||| || | | | || | ||||||| Sbjct 42389 AGCAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACA 42330 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| || | |||||||| ||||| || | || ||| Sbjct 42329 ACATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGCGTCTGAGGGGTGGC 42280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355814215118970