Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2770 181 2e-40 seq2223 176 1e-38 seq3427 172 1e-37 >seq2770 Length=58540 Score = 181 bits (200), Expect = 2e-40 Identities = 168/212 (79%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || || ||||| || || |||||||| | || || Sbjct 46801 AGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCGTCC 46742 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || ||||| || || ||||| ||||| || |||| ||||||||||||| Sbjct 46741 TCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GGAATTCCTTCCTTGTCC 46683 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| ||||| ||||| || |||||||| ||||||||| Sbjct 46682 TGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATCGTC 46623 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 46622 TTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || || || || | ||| || ||||| || || |||||||| ||||| ||||| || Sbjct 46356 ACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGT 46297 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| || || || ||||| || |||||||| || | || ||||| || || | || Sbjct 46296 ACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCC 46237 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||||||||||||| ||| ||||| ||||||||||| || ||| |||||||| Sbjct 46236 TTCTTTGTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAG 46177 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||| || | |||||| || || | |||||| Sbjct 46176 GGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 172 bits (190), Expect = 1e-37 Identities = 173/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || ||||| || | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 45900 ACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGT 45841 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| || || |||||||| || || ||||| | | || || || || |||| || Sbjct 45840 TCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACC 45781 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| Sbjct 45780 TTCCTTATCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAG 45721 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| || || ||||| ||||| || | |||||| || Sbjct 45720 GGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCATATT 45676 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || || || || | ||| || ||||| || || |||||||| ||||| || || || Sbjct 46128 ACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGAGT 46069 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| || || || ||||| || |||||||| || | || ||||| || || | || Sbjct 46068 ACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCC 46009 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| |||||||||||||| ||| ||||| ||||||||||| || ||| |||||||| Sbjct 46008 TTCTTTGTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAG 45949 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || |||||||| || || | |||||| Sbjct 45948 GGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||| || || ||||| || || ||||| ||||| ||||| || Sbjct 47039 ACGAAGACGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGT 46980 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| ||||| || || ||||| || || || ||||| ||||| | || Sbjct 46979 ACGACCATCCTCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCC 46920 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||| || || || || || || ||||||||||| || ||||| | Sbjct 46919 TTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAA 46860 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || ||||| || ||||| || || | ||||| Sbjct 46859 AGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 >seq2223 Length=74567 Score = 176 bits (194), Expect = 1e-38 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | ||||||||| ||||| ||||||||||| ||||| || ||||| | Sbjct 64284 AAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGTTCG 64225 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || || || |||||||| || |||||||| || ||||| ||||| || || | ||||| Sbjct 64224 GCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG-ATGCCTTC 64166 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||||||||||||| || || || |||||||||||||| |||||||| || || Sbjct 64165 CTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGT 64106 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT-TTATGGTT 211123 || ||||| || || || || || || || | ||||||| ||| |||| Sbjct 64105 TATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTGTTAGGGTT 64057 >seq3427 Length=45480 Score = 172 bits (190), Expect = 1e-37 Identities = 172/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || ||||| |||||||| || || ||||| ||||| || | || Sbjct 42513 ACGAAGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGT 42572 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||| || || ||||| || || |||||||| | || ||||| || || | || Sbjct 42573 CCTTCCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACC 42632 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || |||||||| || || || || ||||| ||||| || ||||||||||| Sbjct 42633 TTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAACCTCGAG 42692 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| |||||||| || || ||||| ||||| | |||||| Sbjct 42693 AGTGATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATT 42735 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||||||||| ||||| || |||||||| ||||| ||||| ||||||||||| || Sbjct 42071 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGTGTCCTTCCATCCTCG 42130 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 || ||||| || ||||||||||| | ||| ||||| || || | || || |||||||| Sbjct 42131 AGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTGA 42190 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || || || || || || || || |||||||| ||||| | |||||| |||||| Sbjct 42191 ATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACCTCCAAAGTGATGGTCTTT 42250 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||||| ||||| | |||||| Sbjct 42251 CCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 Score = 150 bits (166), Expect = 4e-31 Identities = 156/203 (77%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| ||||||||||| ||||| || | ||||| |||||||||| ||| Sbjct 42305 TGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCTAAAGTCCTGCCATCTTCCAATTGC 42364 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || |||||||| | ||| ||||| || || | |||||||||||| || || || Sbjct 42365 TTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTC 42424 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || || || || |||||||| ||||| || || || |||||||| || Sbjct 42425 GCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCTCAAG-GTAATGGTCTTTCCTGTA 42483 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | ||||| Sbjct 42484 AGGGTCTTCACAAATATTTGCAT 42506 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||||||||| |||||||| || ||||| ||||| || | || Sbjct 41830 ACGAAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGT 41889 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| |||||||||| ||| || || || || || | | || ||||| || || | || Sbjct 41890 CCTACCATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACC 41949 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || |||||||| || || || || || || ||||| || || || || ||||| | Sbjct 41950 CTCTTTGTCCTGAATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAA 42009 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || |||||||| || | ||||| ||||| | |||||| Sbjct 42010 AGTTATGGTCTTTCCGGTCAAGGTCTTAACAAAGATCTGCAT 42051 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| || || || || ||||| || | |||||||||||| Sbjct 42751 AGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCT 42810 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || || || | | ||||| || || |||| || |||||||| Sbjct 42811 TCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGGGAATCCCCTCCTTGTCT 42870 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||| ||||| || || ||||| |||||||| ||| Sbjct 42871 TGGATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTC 42930 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || ||||| | ||||| Sbjct 42931 TTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158986998335150